Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487480

Identifier: 103487480

GI number: 103487480

Start: 2106104

End: 2107048

Strand: Direct

Name: 103487480

Synonym: Sala_1997

Alternate gene names: NA

Gene position: 2106104-2107048 (Clockwise)

Preceding gene: 103487479

Following gene: 103487490

Centisome position: 62.96

GC content: 73.23

Gene sequence:

>945_bases
GTGTGCGGATCGTGCGTGCCCCGACGATATTCCAGCCGCCCGCCGTCCCGCGCATCGCCGCGACGACGCGCTCGATACAG
CCGGCGGCGCCGTCTTCCATCGCGCCGCCGACGCCCACCAGCACCAGCGTCAGCCGCACCTCGCGCCCCGCGCGGTCCTT
CGTGCCCCAGTCGCGGCCCTCGGCGCCGGCGACCATCGCATAGGGCGCGCTCGCGCGCGGCGGCACCCCGTCGAAAACGC
CGTGCATCATCGCCGCCAGCGCATCGTCGCGCGCCAGCAGGTCGAGCGCGCGGGCGCGCACCGCGCCTTCGGCGCTCGTC
ACTGCCCGCCGCCCAGCGTCAGCCGCCGCCACGGTTGCCACAGCGCGGCGATGGCTGCCGGCGGCGCCGCGCCCGACCCG
TCGCGGGCATCGTGCAGATGCTGTGTCATGCGCAATATCCCCTGCCGGATCGCTTCCGGCACGCCGTTCGGGCCATCGGC
GATCCCCGCGCGATAGGTGACGCGCAGCCGCCCGGCGCCGCCCGCCGCTTCGATCCTTATGTGCGCGCTCCCGTCGCGGC
CGACGGACACGCGGTAATCGGCCTCCGCCAGCGGCGTTTCTCCGCCGCCCGGCGCCAGCAGCGCCACGCTGTCGATGCCG
ACCACCGGCCGCGCGCCGAGCCGCACCATGCCCGCACCGATCGGCAATCGCTCATCGACAGCGCGAATGATCAGCCACTG
GCCGATAAAGGCCTCGCAGATATTGGTCGCGGCGCGGACCAGTCCCGCCACCACCGCATCGTCGACCGTCGCGCCCAGCC
GCAGCCAGCCGCGCGCTTCGTTCAGGCTCACCGGCGCGTCGCCGGGCACCAGACTTTCGGCCATCATCGCTCCTCCACCC
GCATCGTCATCGACCGTTCGTCGATCTGTCCGTCGCTCATCGTCACGCGGTTCGTGACGCGATAG

Upstream 100 bases:

>100_bases
CCCGGCGACTGATCCGCGACCGCCAGGGCTCAGGCCGCAAGGCACCGGCACCGCACGACAATTTCGTGCCGCCAGCCGCC
CTCGCGCCCAAAGCCAAAGC

Downstream 100 bases:

>100_bases
ACGTGGCCCGCGATCCCGCCGGCCAGCGTGACCGTCACTTCCAGCAGGTCGTGCGCCGCGCCGACCACGATCACCCCGCC
ATCCTCGGCCGGTTCGACCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MCGSCVPRRYSSRPPSRASPRRRARYSRRRRLPSRRRRPPAPASAAPRAPRGPSCPSRGPRRRRPSHRARSRAAAPRRKR
RASSPPAHRRAPAGRARGRAPRLRRSSLPAAQRQPPPRLPQRGDGCRRRRARPVAGIVQMLCHAQYPLPDRFRHAVRAIG
DPRAIGDAQPPGAARRFDPYVRAPVAADGHAVIGLRQRRFSAARRQQRHAVDADHRPRAEPHHARTDRQSLIDSANDQPL
ADKGLADIGRGADQSRHHRIVDRRAQPQPAARFVQAHRRVAGHQTFGHHRSSTRIVIDRSSICPSLIVTRFVTR

Sequences:

>Translated_314_residues
MCGSCVPRRYSSRPPSRASPRRRARYSRRRRLPSRRRRPPAPASAAPRAPRGPSCPSRGPRRRRPSHRARSRAAAPRRKR
RASSPPAHRRAPAGRARGRAPRLRRSSLPAAQRQPPPRLPQRGDGCRRRRARPVAGIVQMLCHAQYPLPDRFRHAVRAIG
DPRAIGDAQPPGAARRFDPYVRAPVAADGHAVIGLRQRRFSAARRQQRHAVDADHRPRAEPHHARTDRQSLIDSANDQPL
ADKGLADIGRGADQSRHHRIVDRRAQPQPAARFVQAHRRVAGHQTFGHHRSSTRIVIDRSSICPSLIVTRFVTR
>Mature_314_residues
MCGSCVPRRYSSRPPSRASPRRRARYSRRRRLPSRRRRPPAPASAAPRAPRGPSCPSRGPRRRRPSHRARSRAAAPRRKR
RASSPPAHRRAPAGRARGRAPRLRRSSLPAAQRQPPPRLPQRGDGCRRRRARPVAGIVQMLCHAQYPLPDRFRHAVRAIG
DPRAIGDAQPPGAARRFDPYVRAPVAADGHAVIGLRQRRFSAARRQQRHAVDADHRPRAEPHHARTDRQSLIDSANDQPL
ADKGLADIGRGADQSRHHRIVDRRAQPQPAARFVQAHRRVAGHQTFGHHRSSTRIVIDRSSICPSLIVTRFVTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35372; Mature: 35372

Theoretical pI: Translated: 12.73; Mature: 12.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCGSCVPRRYSSRPPSRASPRRRARYSRRRRLPSRRRRPPAPASAAPRAPRGPSCPSRGP
CCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
RRRRPSHRARSRAAAPRRKRRASSPPAHRRAPAGRARGRAPRLRRSSLPAAQRQPPPRLP
HHCCCHHHHHHHHHCHHHHHHCCCCCHHHCCCCCHHCCCCCHHHHHCCCHHHCCCCCCCC
QRGDGCRRRRARPVAGIVQMLCHAQYPLPDRFRHAVRAIGDPRAIGDAQPPGAARRFDPY
CCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHCCCCCCCCCHHHCCHH
VRAPVAADGHAVIGLRQRRFSAARRQQRHAVDADHRPRAEPHHARTDRQSLIDSANDQPL
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
ADKGLADIGRGADQSRHHRIVDRRAQPQPAARFVQAHRRVAGHQTFGHHRSSTRIVIDRS
HHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECH
SICPSLIVTRFVTR
HCCHHHHHHHHHCC
>Mature Secondary Structure
MCGSCVPRRYSSRPPSRASPRRRARYSRRRRLPSRRRRPPAPASAAPRAPRGPSCPSRGP
CCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
RRRRPSHRARSRAAAPRRKRRASSPPAHRRAPAGRARGRAPRLRRSSLPAAQRQPPPRLP
HHCCCHHHHHHHHHCHHHHHHCCCCCHHHCCCCCHHCCCCCHHHHHCCCHHHCCCCCCCC
QRGDGCRRRRARPVAGIVQMLCHAQYPLPDRFRHAVRAIGDPRAIGDAQPPGAARRFDPY
CCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHCCCCCCCCCHHHCCHH
VRAPVAADGHAVIGLRQRRFSAARRQQRHAVDADHRPRAEPHHARTDRQSLIDSANDQPL
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
ADKGLADIGRGADQSRHHRIVDRRAQPQPAARFVQAHRRVAGHQTFGHHRSSTRIVIDRS
HHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECH
SICPSLIVTRFVTR
HCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA