Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487480
Identifier: 103487480
GI number: 103487480
Start: 2106104
End: 2107048
Strand: Direct
Name: 103487480
Synonym: Sala_1997
Alternate gene names: NA
Gene position: 2106104-2107048 (Clockwise)
Preceding gene: 103487479
Following gene: 103487490
Centisome position: 62.96
GC content: 73.23
Gene sequence:
>945_bases GTGTGCGGATCGTGCGTGCCCCGACGATATTCCAGCCGCCCGCCGTCCCGCGCATCGCCGCGACGACGCGCTCGATACAG CCGGCGGCGCCGTCTTCCATCGCGCCGCCGACGCCCACCAGCACCAGCGTCAGCCGCACCTCGCGCCCCGCGCGGTCCTT CGTGCCCCAGTCGCGGCCCTCGGCGCCGGCGACCATCGCATAGGGCGCGCTCGCGCGCGGCGGCACCCCGTCGAAAACGC CGTGCATCATCGCCGCCAGCGCATCGTCGCGCGCCAGCAGGTCGAGCGCGCGGGCGCGCACCGCGCCTTCGGCGCTCGTC ACTGCCCGCCGCCCAGCGTCAGCCGCCGCCACGGTTGCCACAGCGCGGCGATGGCTGCCGGCGGCGCCGCGCCCGACCCG TCGCGGGCATCGTGCAGATGCTGTGTCATGCGCAATATCCCCTGCCGGATCGCTTCCGGCACGCCGTTCGGGCCATCGGC GATCCCCGCGCGATAGGTGACGCGCAGCCGCCCGGCGCCGCCCGCCGCTTCGATCCTTATGTGCGCGCTCCCGTCGCGGC CGACGGACACGCGGTAATCGGCCTCCGCCAGCGGCGTTTCTCCGCCGCCCGGCGCCAGCAGCGCCACGCTGTCGATGCCG ACCACCGGCCGCGCGCCGAGCCGCACCATGCCCGCACCGATCGGCAATCGCTCATCGACAGCGCGAATGATCAGCCACTG GCCGATAAAGGCCTCGCAGATATTGGTCGCGGCGCGGACCAGTCCCGCCACCACCGCATCGTCGACCGTCGCGCCCAGCC GCAGCCAGCCGCGCGCTTCGTTCAGGCTCACCGGCGCGTCGCCGGGCACCAGACTTTCGGCCATCATCGCTCCTCCACCC GCATCGTCATCGACCGTTCGTCGATCTGTCCGTCGCTCATCGTCACGCGGTTCGTGACGCGATAG
Upstream 100 bases:
>100_bases CCCGGCGACTGATCCGCGACCGCCAGGGCTCAGGCCGCAAGGCACCGGCACCGCACGACAATTTCGTGCCGCCAGCCGCC CTCGCGCCCAAAGCCAAAGC
Downstream 100 bases:
>100_bases ACGTGGCCCGCGATCCCGCCGGCCAGCGTGACCGTCACTTCCAGCAGGTCGTGCGCCGCGCCGACCACGATCACCCCGCC ATCCTCGGCCGGTTCGACCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MCGSCVPRRYSSRPPSRASPRRRARYSRRRRLPSRRRRPPAPASAAPRAPRGPSCPSRGPRRRRPSHRARSRAAAPRRKR RASSPPAHRRAPAGRARGRAPRLRRSSLPAAQRQPPPRLPQRGDGCRRRRARPVAGIVQMLCHAQYPLPDRFRHAVRAIG DPRAIGDAQPPGAARRFDPYVRAPVAADGHAVIGLRQRRFSAARRQQRHAVDADHRPRAEPHHARTDRQSLIDSANDQPL ADKGLADIGRGADQSRHHRIVDRRAQPQPAARFVQAHRRVAGHQTFGHHRSSTRIVIDRSSICPSLIVTRFVTR
Sequences:
>Translated_314_residues MCGSCVPRRYSSRPPSRASPRRRARYSRRRRLPSRRRRPPAPASAAPRAPRGPSCPSRGPRRRRPSHRARSRAAAPRRKR RASSPPAHRRAPAGRARGRAPRLRRSSLPAAQRQPPPRLPQRGDGCRRRRARPVAGIVQMLCHAQYPLPDRFRHAVRAIG DPRAIGDAQPPGAARRFDPYVRAPVAADGHAVIGLRQRRFSAARRQQRHAVDADHRPRAEPHHARTDRQSLIDSANDQPL ADKGLADIGRGADQSRHHRIVDRRAQPQPAARFVQAHRRVAGHQTFGHHRSSTRIVIDRSSICPSLIVTRFVTR >Mature_314_residues MCGSCVPRRYSSRPPSRASPRRRARYSRRRRLPSRRRRPPAPASAAPRAPRGPSCPSRGPRRRRPSHRARSRAAAPRRKR RASSPPAHRRAPAGRARGRAPRLRRSSLPAAQRQPPPRLPQRGDGCRRRRARPVAGIVQMLCHAQYPLPDRFRHAVRAIG DPRAIGDAQPPGAARRFDPYVRAPVAADGHAVIGLRQRRFSAARRQQRHAVDADHRPRAEPHHARTDRQSLIDSANDQPL ADKGLADIGRGADQSRHHRIVDRRAQPQPAARFVQAHRRVAGHQTFGHHRSSTRIVIDRSSICPSLIVTRFVTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35372; Mature: 35372
Theoretical pI: Translated: 12.73; Mature: 12.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCGSCVPRRYSSRPPSRASPRRRARYSRRRRLPSRRRRPPAPASAAPRAPRGPSCPSRGP CCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC RRRRPSHRARSRAAAPRRKRRASSPPAHRRAPAGRARGRAPRLRRSSLPAAQRQPPPRLP HHCCCHHHHHHHHHCHHHHHHCCCCCHHHCCCCCHHCCCCCHHHHHCCCHHHCCCCCCCC QRGDGCRRRRARPVAGIVQMLCHAQYPLPDRFRHAVRAIGDPRAIGDAQPPGAARRFDPY CCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHCCCCCCCCCHHHCCHH VRAPVAADGHAVIGLRQRRFSAARRQQRHAVDADHRPRAEPHHARTDRQSLIDSANDQPL HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC ADKGLADIGRGADQSRHHRIVDRRAQPQPAARFVQAHRRVAGHQTFGHHRSSTRIVIDRS HHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECH SICPSLIVTRFVTR HCCHHHHHHHHHCC >Mature Secondary Structure MCGSCVPRRYSSRPPSRASPRRRARYSRRRRLPSRRRRPPAPASAAPRAPRGPSCPSRGP CCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC RRRRPSHRARSRAAAPRRKRRASSPPAHRRAPAGRARGRAPRLRRSSLPAAQRQPPPRLP HHCCCHHHHHHHHHCHHHHHHCCCCCHHHCCCCCHHCCCCCHHHHHCCCHHHCCCCCCCC QRGDGCRRRRARPVAGIVQMLCHAQYPLPDRFRHAVRAIGDPRAIGDAQPPGAARRFDPY CCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHCCCCCCCCCHHHCCHH VRAPVAADGHAVIGLRQRRFSAARRQQRHAVDADHRPRAEPHHARTDRQSLIDSANDQPL HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC ADKGLADIGRGADQSRHHRIVDRRAQPQPAARFVQAHRRVAGHQTFGHHRSSTRIVIDRS HHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECH SICPSLIVTRFVTR HCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA