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The map label for this gene is ybiX [C]

Identifier: 103487394

GI number: 103487394

Start: 2009118

End: 2009774

Strand: Direct

Name: ybiX [C]

Synonym: Sala_1910

Alternate gene names: 103487394

Gene position: 2009118-2009774 (Clockwise)

Preceding gene: 103487393

Following gene: 103487396

Centisome position: 60.06

GC content: 60.73

Gene sequence:

>657_bases
ATGTTCAAGCTTGTTCAGCTGCTCGGTGACAATGCGGTGCGCGCACTGCGCGATATCGCCGCAAGCGGCACCTTTGTAGA
CGGCAAGATCAGTAACCCGCATTCCAGGGTAAAGAATAACCTGCAACTGCACGACGCGGCGGCTTACGAACGCTCGTCGA
AAATCCTGCTCGATGCGATGATCCAGAACGCTGATTTCATGGAGTTTTCCTTCCCCGCGCGCATCGCCCCGCCGCTGCTG
ACGCGATACACCCCTGGCATGCACTATGGGCTGCACCCCGATGCCGCCTATATCCCGCTGCCCGACGGCCAGCTTCGCAC
CGACGTCAGCTGTACCATCTTCCTCAGCGACCCCGCCGATTATGACGGCGGCGCGCTCCATGTGCAGCTCGGTAACGCCG
ATCTGCGCTTTAAGGAAGCGCCCGGCGTCGCAATCGTCTACCCATCGCATACGCTGCACGAGGTCGAACCGGTGACCCGC
GGCGAGCGACTGGTCGCCATCACCTTTATCCAGAGCCTGATTCCCGACGTCCAACAGCGGAACCTCATGCACGAACTTAA
CGAGATCGCGGCGCTGGAGGGCGGCAAGATGGAGCCCGCAAACTACACGCGACTCCAAGCCGTCCAGTATCAGTTGCTCA
GAATGTGGCGGCGCTGA

Upstream 100 bases:

>100_bases
CCCCCGCTATCTCCGACGCGATCGACTGGGTTGAAGCGATGGCGGTGCGCTATAATAGCCTCGCCGACCTGCCGATCCAC
GGCTGTTAGGAAGATCGAAA

Downstream 100 bases:

>100_bases
GGATCAATAGCCCATCAAACCCAGCACTTCCTTCCGGCTGCGCTGGTCTTCGAGGAAACAGCCGAGCAGGCGGCTCGTTA
CCATGCCGACGCCGGGCGTG

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MFKLVQLLGDNAVRALRDIAASGTFVDGKISNPHSRVKNNLQLHDAAAYERSSKILLDAMIQNADFMEFSFPARIAPPLL
TRYTPGMHYGLHPDAAYIPLPDGQLRTDVSCTIFLSDPADYDGGALHVQLGNADLRFKEAPGVAIVYPSHTLHEVEPVTR
GERLVAITFIQSLIPDVQQRNLMHELNEIAALEGGKMEPANYTRLQAVQYQLLRMWRR

Sequences:

>Translated_218_residues
MFKLVQLLGDNAVRALRDIAASGTFVDGKISNPHSRVKNNLQLHDAAAYERSSKILLDAMIQNADFMEFSFPARIAPPLL
TRYTPGMHYGLHPDAAYIPLPDGQLRTDVSCTIFLSDPADYDGGALHVQLGNADLRFKEAPGVAIVYPSHTLHEVEPVTR
GERLVAITFIQSLIPDVQQRNLMHELNEIAALEGGKMEPANYTRLQAVQYQLLRMWRR
>Mature_218_residues
MFKLVQLLGDNAVRALRDIAASGTFVDGKISNPHSRVKNNLQLHDAAAYERSSKILLDAMIQNADFMEFSFPARIAPPLL
TRYTPGMHYGLHPDAAYIPLPDGQLRTDVSCTIFLSDPADYDGGALHVQLGNADLRFKEAPGVAIVYPSHTLHEVEPVTR
GERLVAITFIQSLIPDVQQRNLMHELNEIAALEGGKMEPANYTRLQAVQYQLLRMWRR

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=221, Percent_Identity=35.2941176470588, Blast_Score=121, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1910_SPHAL (Q1GRV0)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_616955.1
- ProteinModelPortal:   Q1GRV0
- GeneID:   4082616
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_1910
- NMPDR:   fig|317655.9.peg.1838
- HOGENOM:   HBG285605
- OMA:   GESFGYH
- ProtClustDB:   PRK05467
- BioCyc:   SALA317655:SALA_1910-MONOMER
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 24362; Mature: 24362

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 163-163

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKLVQLLGDNAVRALRDIAASGTFVDGKISNPHSRVKNNLQLHDAAAYERSSKILLDAM
CHHHHHHHCCHHHHHHHHHHHCCCEECCCCCCCHHHHHCCCEEEHHHHHHCCCHHHHHHH
IQNADFMEFSFPARIAPPLLTRYTPGMHYGLHPDAAYIPLPDGQLRTDVSCTIFLSDPAD
HCCCCCEEECCCCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCC
YDGGALHVQLGNADLRFKEAPGVAIVYPSHTLHEVEPVTRGERLVAITFIQSLIPDVQQR
CCCCEEEEEECCCCEEEECCCCEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHCCHHHHH
NLMHELNEIAALEGGKMEPANYTRLQAVQYQLLRMWRR
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFKLVQLLGDNAVRALRDIAASGTFVDGKISNPHSRVKNNLQLHDAAAYERSSKILLDAM
CHHHHHHHCCHHHHHHHHHHHCCCEECCCCCCCHHHHHCCCEEEHHHHHHCCCHHHHHHH
IQNADFMEFSFPARIAPPLLTRYTPGMHYGLHPDAAYIPLPDGQLRTDVSCTIFLSDPAD
HCCCCCEEECCCCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCC
YDGGALHVQLGNADLRFKEAPGVAIVYPSHTLHEVEPVTRGERLVAITFIQSLIPDVQQR
CCCCEEEEEECCCCEEEECCCCEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHCCHHHHH
NLMHELNEIAALEGGKMEPANYTRLQAVQYQLLRMWRR
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA