Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487393
Identifier: 103487393
GI number: 103487393
Start: 2008069
End: 2009106
Strand: Direct
Name: 103487393
Synonym: Sala_1909
Alternate gene names: NA
Gene position: 2008069-2009106 (Clockwise)
Preceding gene: 103487392
Following gene: 103487394
Centisome position: 60.03
GC content: 65.13
Gene sequence:
>1038_bases ATGACCGCCTTATCGCTTCCTGAACGCTTTGCCACCGACGCGGGCCTGCTTCCGCATATGGCCGACCTCGCGAACGACCG GATATTGATCGCGCAACTCGGCGAAGGTGATTATCGCAGCGCAAGCTTTCTCGACCAGCGCTTGCTCACCGACCGGATCG GGCGTGAATGGGTGCCGTGGACGACGCTGCCGGACCTTGGCTCCGCCGCGCCGCATCCGCATTTCATCTTTCACATCGGC CATGTCGGTTCGACGCTCGTTTCACGCCTGATTGCCGAGATCGCCGACGTGCTGCCGCTGCGCGAACCGATGCTGCTGCG CACACTCGCGCAGGTTGCGGAACGTATCGAGCGTCCCGAATCTTTATGGTCACCCGCGCTCTACCGCGAGCGACTGCGCC AGGTCGGCGGCTGGCTGGGCCGGAGCTTCCGCCCAGGGCAGCAACCGATCGTCAAGGCGTCGAGCGTCATCACCGCAATC GCCGACGATTTGACCGCGAACGGAGGGCGCGTATTGTTTCTCCACGTCCCCCTGCCCCGCTATATCGAAACGATCCTGGC CGGCGATGCCTCGACGAAAGAGACGCTGGCGCAGGCCCCGGCGCGCATGGCGCGGCTCGCGGCGCTGTTTCCCGACCTGC CCTTTGCGTTATGGCAACTCCCGCCGGTCACGCGCATCGCGATGAGCTGGCTTTGCGAGATGGCGAGCGCGCAGCGTACG TTGCCGCCGACCAACCCGCGCTATGAATGGGCGGATTTCGAGACCCTCTTGGGCGATCCTGCTTCCGCACTCGCGGTTCA GGCGGGACATTTCGGCCTGTCGGTCGACGCCAGGCGGATCGATATGGCGCTTGCCGGTCCGATCATGCGTCAATACTCGA AGGCTCCCGAACACGGCTACAGCCCCGACCTGCGCCGCCAGCTTCAGGCCGAAGCGGCCGCCCGTCACGCCCCCGCTATC TCCGACGCGATCGACTGGGTTGAAGCGATGGCGGTGCGCTATAATAGCCTCGCCGACCTGCCGATCCACGGCTGTTAG
Upstream 100 bases:
>100_bases TATCGTGCACATGCGGCTTTCGACTGGACTCCGGGCCAGGCCTATTGCTCCCACCGTCAAGGCTGGCTAATCGCCATGCG CTTTCCTATGGCTGGCAGGG
Downstream 100 bases:
>100_bases GAAGATCGAAAATGTTCAAGCTTGTTCAGCTGCTCGGTGACAATGCGGTGCGCGCACTGCGCGATATCGCCGCAAGCGGC ACCTTTGTAGACGGCAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MTALSLPERFATDAGLLPHMADLANDRILIAQLGEGDYRSASFLDQRLLTDRIGREWVPWTTLPDLGSAAPHPHFIFHIG HVGSTLVSRLIAEIADVLPLREPMLLRTLAQVAERIERPESLWSPALYRERLRQVGGWLGRSFRPGQQPIVKASSVITAI ADDLTANGGRVLFLHVPLPRYIETILAGDASTKETLAQAPARMARLAALFPDLPFALWQLPPVTRIAMSWLCEMASAQRT LPPTNPRYEWADFETLLGDPASALAVQAGHFGLSVDARRIDMALAGPIMRQYSKAPEHGYSPDLRRQLQAEAAARHAPAI SDAIDWVEAMAVRYNSLADLPIHGC
Sequences:
>Translated_345_residues MTALSLPERFATDAGLLPHMADLANDRILIAQLGEGDYRSASFLDQRLLTDRIGREWVPWTTLPDLGSAAPHPHFIFHIG HVGSTLVSRLIAEIADVLPLREPMLLRTLAQVAERIERPESLWSPALYRERLRQVGGWLGRSFRPGQQPIVKASSVITAI ADDLTANGGRVLFLHVPLPRYIETILAGDASTKETLAQAPARMARLAALFPDLPFALWQLPPVTRIAMSWLCEMASAQRT LPPTNPRYEWADFETLLGDPASALAVQAGHFGLSVDARRIDMALAGPIMRQYSKAPEHGYSPDLRRQLQAEAAARHAPAI SDAIDWVEAMAVRYNSLADLPIHGC >Mature_344_residues TALSLPERFATDAGLLPHMADLANDRILIAQLGEGDYRSASFLDQRLLTDRIGREWVPWTTLPDLGSAAPHPHFIFHIGH VGSTLVSRLIAEIADVLPLREPMLLRTLAQVAERIERPESLWSPALYRERLRQVGGWLGRSFRPGQQPIVKASSVITAIA DDLTANGGRVLFLHVPLPRYIETILAGDASTKETLAQAPARMARLAALFPDLPFALWQLPPVTRIAMSWLCEMASAQRTL PPTNPRYEWADFETLLGDPASALAVQAGHFGLSVDARRIDMALAGPIMRQYSKAPEHGYSPDLRRQLQAEAAARHAPAIS DAIDWVEAMAVRYNSLADLPIHGC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38001; Mature: 37870
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALSLPERFATDAGLLPHMADLANDRILIAQLGEGDYRSASFLDQRLLTDRIGREWVPW CCCCCCCHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC TTLPDLGSAAPHPHFIFHIGHVGSTLVSRLIAEIADVLPLREPMLLRTLAQVAERIERPE CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH SLWSPALYRERLRQVGGWLGRSFRPGQQPIVKASSVITAIADDLTANGGRVLFLHVPLPR HHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHH YIETILAGDASTKETLAQAPARMARLAALFPDLPFALWQLPPVTRIAMSWLCEMASAQRT HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCC LPPTNPRYEWADFETLLGDPASALAVQAGHFGLSVDARRIDMALAGPIMRQYSKAPEHGY CCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC SPDLRRQLQAEAAARHAPAISDAIDWVEAMAVRYNSLADLPIHGC CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure TALSLPERFATDAGLLPHMADLANDRILIAQLGEGDYRSASFLDQRLLTDRIGREWVPW CCCCCCHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC TTLPDLGSAAPHPHFIFHIGHVGSTLVSRLIAEIADVLPLREPMLLRTLAQVAERIERPE CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH SLWSPALYRERLRQVGGWLGRSFRPGQQPIVKASSVITAIADDLTANGGRVLFLHVPLPR HHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHH YIETILAGDASTKETLAQAPARMARLAALFPDLPFALWQLPPVTRIAMSWLCEMASAQRT HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCC LPPTNPRYEWADFETLLGDPASALAVQAGHFGLSVDARRIDMALAGPIMRQYSKAPEHGY CCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC SPDLRRQLQAEAAARHAPAISDAIDWVEAMAVRYNSLADLPIHGC CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA