Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487393

Identifier: 103487393

GI number: 103487393

Start: 2008069

End: 2009106

Strand: Direct

Name: 103487393

Synonym: Sala_1909

Alternate gene names: NA

Gene position: 2008069-2009106 (Clockwise)

Preceding gene: 103487392

Following gene: 103487394

Centisome position: 60.03

GC content: 65.13

Gene sequence:

>1038_bases
ATGACCGCCTTATCGCTTCCTGAACGCTTTGCCACCGACGCGGGCCTGCTTCCGCATATGGCCGACCTCGCGAACGACCG
GATATTGATCGCGCAACTCGGCGAAGGTGATTATCGCAGCGCAAGCTTTCTCGACCAGCGCTTGCTCACCGACCGGATCG
GGCGTGAATGGGTGCCGTGGACGACGCTGCCGGACCTTGGCTCCGCCGCGCCGCATCCGCATTTCATCTTTCACATCGGC
CATGTCGGTTCGACGCTCGTTTCACGCCTGATTGCCGAGATCGCCGACGTGCTGCCGCTGCGCGAACCGATGCTGCTGCG
CACACTCGCGCAGGTTGCGGAACGTATCGAGCGTCCCGAATCTTTATGGTCACCCGCGCTCTACCGCGAGCGACTGCGCC
AGGTCGGCGGCTGGCTGGGCCGGAGCTTCCGCCCAGGGCAGCAACCGATCGTCAAGGCGTCGAGCGTCATCACCGCAATC
GCCGACGATTTGACCGCGAACGGAGGGCGCGTATTGTTTCTCCACGTCCCCCTGCCCCGCTATATCGAAACGATCCTGGC
CGGCGATGCCTCGACGAAAGAGACGCTGGCGCAGGCCCCGGCGCGCATGGCGCGGCTCGCGGCGCTGTTTCCCGACCTGC
CCTTTGCGTTATGGCAACTCCCGCCGGTCACGCGCATCGCGATGAGCTGGCTTTGCGAGATGGCGAGCGCGCAGCGTACG
TTGCCGCCGACCAACCCGCGCTATGAATGGGCGGATTTCGAGACCCTCTTGGGCGATCCTGCTTCCGCACTCGCGGTTCA
GGCGGGACATTTCGGCCTGTCGGTCGACGCCAGGCGGATCGATATGGCGCTTGCCGGTCCGATCATGCGTCAATACTCGA
AGGCTCCCGAACACGGCTACAGCCCCGACCTGCGCCGCCAGCTTCAGGCCGAAGCGGCCGCCCGTCACGCCCCCGCTATC
TCCGACGCGATCGACTGGGTTGAAGCGATGGCGGTGCGCTATAATAGCCTCGCCGACCTGCCGATCCACGGCTGTTAG

Upstream 100 bases:

>100_bases
TATCGTGCACATGCGGCTTTCGACTGGACTCCGGGCCAGGCCTATTGCTCCCACCGTCAAGGCTGGCTAATCGCCATGCG
CTTTCCTATGGCTGGCAGGG

Downstream 100 bases:

>100_bases
GAAGATCGAAAATGTTCAAGCTTGTTCAGCTGCTCGGTGACAATGCGGTGCGCGCACTGCGCGATATCGCCGCAAGCGGC
ACCTTTGTAGACGGCAAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MTALSLPERFATDAGLLPHMADLANDRILIAQLGEGDYRSASFLDQRLLTDRIGREWVPWTTLPDLGSAAPHPHFIFHIG
HVGSTLVSRLIAEIADVLPLREPMLLRTLAQVAERIERPESLWSPALYRERLRQVGGWLGRSFRPGQQPIVKASSVITAI
ADDLTANGGRVLFLHVPLPRYIETILAGDASTKETLAQAPARMARLAALFPDLPFALWQLPPVTRIAMSWLCEMASAQRT
LPPTNPRYEWADFETLLGDPASALAVQAGHFGLSVDARRIDMALAGPIMRQYSKAPEHGYSPDLRRQLQAEAAARHAPAI
SDAIDWVEAMAVRYNSLADLPIHGC

Sequences:

>Translated_345_residues
MTALSLPERFATDAGLLPHMADLANDRILIAQLGEGDYRSASFLDQRLLTDRIGREWVPWTTLPDLGSAAPHPHFIFHIG
HVGSTLVSRLIAEIADVLPLREPMLLRTLAQVAERIERPESLWSPALYRERLRQVGGWLGRSFRPGQQPIVKASSVITAI
ADDLTANGGRVLFLHVPLPRYIETILAGDASTKETLAQAPARMARLAALFPDLPFALWQLPPVTRIAMSWLCEMASAQRT
LPPTNPRYEWADFETLLGDPASALAVQAGHFGLSVDARRIDMALAGPIMRQYSKAPEHGYSPDLRRQLQAEAAARHAPAI
SDAIDWVEAMAVRYNSLADLPIHGC
>Mature_344_residues
TALSLPERFATDAGLLPHMADLANDRILIAQLGEGDYRSASFLDQRLLTDRIGREWVPWTTLPDLGSAAPHPHFIFHIGH
VGSTLVSRLIAEIADVLPLREPMLLRTLAQVAERIERPESLWSPALYRERLRQVGGWLGRSFRPGQQPIVKASSVITAIA
DDLTANGGRVLFLHVPLPRYIETILAGDASTKETLAQAPARMARLAALFPDLPFALWQLPPVTRIAMSWLCEMASAQRTL
PPTNPRYEWADFETLLGDPASALAVQAGHFGLSVDARRIDMALAGPIMRQYSKAPEHGYSPDLRRQLQAEAAARHAPAIS
DAIDWVEAMAVRYNSLADLPIHGC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38001; Mature: 37870

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALSLPERFATDAGLLPHMADLANDRILIAQLGEGDYRSASFLDQRLLTDRIGREWVPW
CCCCCCCHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC
TTLPDLGSAAPHPHFIFHIGHVGSTLVSRLIAEIADVLPLREPMLLRTLAQVAERIERPE
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH
SLWSPALYRERLRQVGGWLGRSFRPGQQPIVKASSVITAIADDLTANGGRVLFLHVPLPR
HHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHH
YIETILAGDASTKETLAQAPARMARLAALFPDLPFALWQLPPVTRIAMSWLCEMASAQRT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCC
LPPTNPRYEWADFETLLGDPASALAVQAGHFGLSVDARRIDMALAGPIMRQYSKAPEHGY
CCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
SPDLRRQLQAEAAARHAPAISDAIDWVEAMAVRYNSLADLPIHGC
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TALSLPERFATDAGLLPHMADLANDRILIAQLGEGDYRSASFLDQRLLTDRIGREWVPW
CCCCCCHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC
TTLPDLGSAAPHPHFIFHIGHVGSTLVSRLIAEIADVLPLREPMLLRTLAQVAERIERPE
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH
SLWSPALYRERLRQVGGWLGRSFRPGQQPIVKASSVITAIADDLTANGGRVLFLHVPLPR
HHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHH
YIETILAGDASTKETLAQAPARMARLAALFPDLPFALWQLPPVTRIAMSWLCEMASAQRT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCC
LPPTNPRYEWADFETLLGDPASALAVQAGHFGLSVDARRIDMALAGPIMRQYSKAPEHGY
CCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
SPDLRRQLQAEAAARHAPAISDAIDWVEAMAVRYNSLADLPIHGC
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA