Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487390
Identifier: 103487390
GI number: 103487390
Start: 2005083
End: 2005805
Strand: Direct
Name: 103487390
Synonym: Sala_1906
Alternate gene names: NA
Gene position: 2005083-2005805 (Clockwise)
Preceding gene: 103487388
Following gene: 103487391
Centisome position: 59.94
GC content: 66.94
Gene sequence:
>723_bases GTGCGCGTATTGGCATTGGCTTCACAGAAGGGCGGGTCGGGCAAGACGACGCTGTCGGGGCACCTTGCGGTGCAGGCACA GCTTGCCGGCGCCGGTCCCGTCGTCCTCATCGACATCGACCCGCAGGGTTCGCTCGCCGACTGGTGGAACGAACGCGAAA CCGACCTTCCCGCCTTTGCACAGACCACCGTTGCGCGGCTCGCGTCCGACCTTGAAATCCTGCGCCAGCAGGGCTTCAAG CTCGCGGTCATCGACACCCCGCCCGCGATCACCATGGCGATCCAGAGCGTCATTTCGGTCGCCGAGCTGATCGTCGTGCC GACGCGCCCCAGCCCGCACGACCTGCGCGCCGTCGGCGCTACCGTCGACCTGTGCGAACGCGCCGGCAAGCCGCTGGTAT TCGTCGTCAACGCCGCGACCCCGAAAGCCAAGATTACCAGCGAAGCCGCCGTCGCCCTGTCGCAGCACGGCACCGTCGCC CCCGTCACGCTGCACCATCGCACCGACTATGCCGCCTCGATGATCGACGGCCGCACGGTGATGGAGGTCGATCCGAACGG CCGTTCGGCCGAAGAGATCCGCCAGCTGTGGACCTATATGAACGACCGGCTCGAAAAGAACTTCCGCCGCACCGTTTTCG CCGCGCCGCTGCCCCAACAGGGCAATTACGGCACGGTTCGCCCGATGGGCGGTGGTTTTGGCCGCCGCATCGCTGGCCAG TGA
Upstream 100 bases:
>100_bases AAACAACTCGTTCACGCTCTTTTTATCATCGTTAACTCAATTTTAGCGCCCTGCGTGGCATCCCTTCGCCGATTTGATGG ATTTCCGAGGGGGTAACGCA
Downstream 100 bases:
>100_bases CGGGAGGGACAGGAACCATGGGCGAACCGAAACCCCTCGCATCGCTGAGCGCCGGACTCCTGGCCCGCAAGGGCGGCGCA CGCCCCGCCATGCGCCGCCA
Product: plasmid partitioning-family protein
Products: NA
Alternate protein names: Cobyrinic Acid A C-Diamide Synthase; Partition Protein; ParA Family Protein; ParA-Like Protein; Plasmid Partition Protein ParA; ATPase ParA Type; ParA Family Partition Protein; Plasmid Partitioning Protein; CobQ/CobB/MinD/ParA Domain-Containing Protein; Plasmid Partitioning-Family Protein; Partitioning Protein; Chromosome Partitioning ATPase; ATPase; Plasmid Stability Protein ParA; ParA Plasmid Partitioning Protein; Plasmid Partitioning Protein F; ATPases Involved In Chromosome Partitioning; Plasmid Partitioning Protein-Like; ParA Family Plasmid Partitioning Protein; Plasmid Partition Protein ParA-Like Protein; Plasmid Partitioning Family Protein ParA/MinD; ATPases Involved In Chromosome Partitioning-Like Protein; Plasmid Partition Protein ParF; Plasmid Partition Protein; ParA Partitioning Protein; Plasmid Segregation Oscillating ATPase ParF; ATPase Putative Partition Protein; Soj/ParA-Like ATPase Protein; Chromosome Partitioning; ParA Protein; MinD/ParA Family ATPase; Partition Protein A; ParA Partitioning-Like Protein; Plasmid Partitioning-Like Protein; Partitioning Protein ParA-Family; Plasmid Partitioning Family Protein ParA
Number of amino acids: Translated: 240; Mature: 240
Protein sequence:
>240_residues MRVLALASQKGGSGKTTLSGHLAVQAQLAGAGPVVLIDIDPQGSLADWWNERETDLPAFAQTTVARLASDLEILRQQGFK LAVIDTPPAITMAIQSVISVAELIVVPTRPSPHDLRAVGATVDLCERAGKPLVFVVNAATPKAKITSEAAVALSQHGTVA PVTLHHRTDYAASMIDGRTVMEVDPNGRSAEEIRQLWTYMNDRLEKNFRRTVFAAPLPQQGNYGTVRPMGGGFGRRIAGQ
Sequences:
>Translated_240_residues MRVLALASQKGGSGKTTLSGHLAVQAQLAGAGPVVLIDIDPQGSLADWWNERETDLPAFAQTTVARLASDLEILRQQGFK LAVIDTPPAITMAIQSVISVAELIVVPTRPSPHDLRAVGATVDLCERAGKPLVFVVNAATPKAKITSEAAVALSQHGTVA PVTLHHRTDYAASMIDGRTVMEVDPNGRSAEEIRQLWTYMNDRLEKNFRRTVFAAPLPQQGNYGTVRPMGGGFGRRIAGQ >Mature_240_residues MRVLALASQKGGSGKTTLSGHLAVQAQLAGAGPVVLIDIDPQGSLADWWNERETDLPAFAQTTVARLASDLEILRQQGFK LAVIDTPPAITMAIQSVISVAELIVVPTRPSPHDLRAVGATVDLCERAGKPLVFVVNAATPKAKITSEAAVALSQHGTVA PVTLHHRTDYAASMIDGRTVMEVDPNGRSAEEIRQLWTYMNDRLEKNFRRTVFAAPLPQQGNYGTVRPMGGGFGRRIAGQ
Specific function: Unknown
COG id: COG1192
COG function: function code D; ATPases involved in chromosome partitioning
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25682; Mature: 25682
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVLALASQKGGSGKTTLSGHLAVQAQLAGAGPVVLIDIDPQGSLADWWNERETDLPAFA CEEEEEECCCCCCCCEEEECEEEEEEEECCCCCEEEEEECCCCCHHHHCCCCCCCCCHHH QTTVARLASDLEILRQQGFKLAVIDTPPAITMAIQSVISVAELIVVPTRPSPHDLRAVGA HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHH TVDLCERAGKPLVFVVNAATPKAKITSEAAVALSQHGTVAPVTLHHRTDYAASMIDGRTV HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCEE MEVDPNGRSAEEIRQLWTYMNDRLEKNFRRTVFAAPLPQQGNYGTVRPMGGGFGRRIAGQ EEECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEECCCCCCCCCCCCCC >Mature Secondary Structure MRVLALASQKGGSGKTTLSGHLAVQAQLAGAGPVVLIDIDPQGSLADWWNERETDLPAFA CEEEEEECCCCCCCCEEEECEEEEEEEECCCCCEEEEEECCCCCHHHHCCCCCCCCCHHH QTTVARLASDLEILRQQGFKLAVIDTPPAITMAIQSVISVAELIVVPTRPSPHDLRAVGA HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHH TVDLCERAGKPLVFVVNAATPKAKITSEAAVALSQHGTVAPVTLHHRTDYAASMIDGRTV HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCEE MEVDPNGRSAEEIRQLWTYMNDRLEKNFRRTVFAAPLPQQGNYGTVRPMGGGFGRRIAGQ EEECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA