Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487388
Identifier: 103487388
GI number: 103487388
Start: 2002725
End: 2003594
Strand: Direct
Name: 103487388
Synonym: Sala_1904
Alternate gene names: NA
Gene position: 2002725-2003594 (Clockwise)
Preceding gene: 103487386
Following gene: 103487390
Centisome position: 59.87
GC content: 66.9
Gene sequence:
>870_bases ATGATCGAAGTAATGAGCCTGTTTCTGTGGCTTGCGGGTGCGGGCGGGACGCCCGTTCCGGCGATCGATCCGCTGACGCA GCCGATCGAGACGTCACGATCGGCGGAATGGCTGGCGCCTGCGGAACCCGAAAAAATCTTTGGCAACACCTATCTTGTCG GCTTCGCGGGGCTGAGCGTCGCACTGATCGACACGGGCGACGGGCTGGTGCTCGTCGACGGCGCGCTGCCGCAGGCGGCG CCCGCAATCCTCGCCAATGTGCGCAAGCTCGGCTTCGACCCGCAAGACATCAAATATATTCTGAGCACCGAACCCCATTT CGACCATGCCGGCGGCCTCGCCGCGCTCGCGCGCGACACCGGCGCGGCGGTGGTCGCAAGCGTGCGCGGCGCCGAGGGGC TGCGCAGCGGCCGCCACGCGGCCGACGACCCGCAGCTCGGCTATGGCGGCAGTTGGCCCGCGGTCGCGAACGTCCGCACG ATGAAGGATGGCGAAGTGCTGCGGCTTGGCACGACGGCGATCACCGCCATCGCAACGCCGGGGCACACGATGGGCAGCAT GAGCTGGACGTGGCAGGCATGCGAGGGCCGCGTTTGCAAGGCGGTGGTGTTTGCATCGAGCCTCAATCCCGTCTCGGCCG ATGGCTATCGCTTCACCTCCCGCGCGGGCAAACCCTTCATCAAAGGCTTTGAGGCAAGTTATCGCAAGATGGATGCGGTG CCGTGCGACATATTGATCTCAGCGCACCCCGACAATGCGGGCAACGGGCGCTACAGCGAAAAAGCCGGCGCCTGCCGCGC CTATGCCGACCGCTCGCGCCGCGCGCTCGCCAGGCGGCTGGCCAGCGAGCGCGTCGAAACACCGAAGTAG
Upstream 100 bases:
>100_bases TCCATGGCTTATCATCAATTATTCTCATGGCTTTGTCGAGAAATGATGCTTTGTCGCACGGAGGGCGAACGGGCATTTTC GATGACGAAAGGAGATGATG
Downstream 100 bases:
>100_bases CGGACTGCGTCGCCGTTGCTGACGCGCGGCAAAAATCGCCTATCTGTCAACCACCAGACAGGCCTGACCATCCTTGCGCA ACGACGCGCAGAATCTTTCG
Product: beta-lactamase-like protein
Products: NA
Alternate protein names: Beta-lactamase type II; Penicillinase [H]
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MIEVMSLFLWLAGAGGTPVPAIDPLTQPIETSRSAEWLAPAEPEKIFGNTYLVGFAGLSVALIDTGDGLVLVDGALPQAA PAILANVRKLGFDPQDIKYILSTEPHFDHAGGLAALARDTGAAVVASVRGAEGLRSGRHAADDPQLGYGGSWPAVANVRT MKDGEVLRLGTTAITAIATPGHTMGSMSWTWQACEGRVCKAVVFASSLNPVSADGYRFTSRAGKPFIKGFEASYRKMDAV PCDILISAHPDNAGNGRYSEKAGACRAYADRSRRALARRLASERVETPK
Sequences:
>Translated_289_residues MIEVMSLFLWLAGAGGTPVPAIDPLTQPIETSRSAEWLAPAEPEKIFGNTYLVGFAGLSVALIDTGDGLVLVDGALPQAA PAILANVRKLGFDPQDIKYILSTEPHFDHAGGLAALARDTGAAVVASVRGAEGLRSGRHAADDPQLGYGGSWPAVANVRT MKDGEVLRLGTTAITAIATPGHTMGSMSWTWQACEGRVCKAVVFASSLNPVSADGYRFTSRAGKPFIKGFEASYRKMDAV PCDILISAHPDNAGNGRYSEKAGACRAYADRSRRALARRLASERVETPK >Mature_289_residues MIEVMSLFLWLAGAGGTPVPAIDPLTQPIETSRSAEWLAPAEPEKIFGNTYLVGFAGLSVALIDTGDGLVLVDGALPQAA PAILANVRKLGFDPQDIKYILSTEPHFDHAGGLAALARDTGAAVVASVRGAEGLRSGRHAADDPQLGYGGSWPAVANVRT MKDGEVLRLGTTAITAIATPGHTMGSMSWTWQACEGRVCKAVVFASSLNPVSADGYRFTSRAGKPFIKGFEASYRKMDAV PCDILISAHPDNAGNGRYSEKAGACRAYADRSRRALARRLASERVETPK
Specific function: Has a high activity against imipenem [H]
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-B beta-lactamase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001018 - InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: =3.5.2.6 [H]
Molecular weight: Translated: 30482; Mature: 30482
Theoretical pI: Translated: 7.97; Mature: 7.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEVMSLFLWLAGAGGTPVPAIDPLTQPIETSRSAEWLAPAEPEKIFGNTYLVGFAGLSV CHHHHEEHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHCCCEEEEEECCCEE ALIDTGDGLVLVDGALPQAAPAILANVRKLGFDPQDIKYILSTEPHFDHAGGLAALARDT EEEECCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHEEEECCCCCCCCCCCHHHHHHCC GAAVVASVRGAEGLRSGRHAADDPQLGYGGSWPAVANVRTMKDGEVLRLGTTAITAIATP CCEEEEEHHCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCEEEEEECC GHTMGSMSWTWQACEGRVCKAVVFASSLNPVSADGYRFTSRAGKPFIKGFEASYRKMDAV CCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCC PCDILISAHPDNAGNGRYSEKAGACRAYADRSRRALARRLASERVETPK CEEEEEEECCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MIEVMSLFLWLAGAGGTPVPAIDPLTQPIETSRSAEWLAPAEPEKIFGNTYLVGFAGLSV CHHHHEEHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHCCCEEEEEECCCEE ALIDTGDGLVLVDGALPQAAPAILANVRKLGFDPQDIKYILSTEPHFDHAGGLAALARDT EEEECCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHEEEECCCCCCCCCCCHHHHHHCC GAAVVASVRGAEGLRSGRHAADDPQLGYGGSWPAVANVRTMKDGEVLRLGTTAITAIATP CCEEEEEHHCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCEEEEEECC GHTMGSMSWTWQACEGRVCKAVVFASSLNPVSADGYRFTSRAGKPFIKGFEASYRKMDAV CCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCC PCDILISAHPDNAGNGRYSEKAGACRAYADRSRRALARRLASERVETPK CEEEEEEECCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8018721; 3931629; 9811546 [H]