Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487333
Identifier: 103487333
GI number: 103487333
Start: 1944983
End: 1945906
Strand: Direct
Name: 103487333
Synonym: Sala_1849
Alternate gene names: NA
Gene position: 1944983-1945906 (Clockwise)
Preceding gene: 103487332
Following gene: 103487334
Centisome position: 58.14
GC content: 71.54
Gene sequence:
>924_bases ATGTTGGGCAGGTTCGACGCGCTGGACCGCCTCGTCCAGCTCCTGCTGCTCGCCGCGGGGCTTGGCGCGGTCGCCAATGG CGCCTTCATGCTCATTGACCCGCTCGAATGGTATGTTTTCATCCCCACGGTCGTGACGACCGGTCCGCCCAACGCGCATT TCATCCGCGACATCGGCCTGGCCTATCTGGGATCGGGCGCGATTCTCGTTTATGCCGCCGCGCACCCGATTCTCCGCTGG CGCGCCGCGCTCGTCGGCGGGCTGTGGCTGACGCTGCACGGGCTGCTTCACATCTATGAGGTGCTGGCGGGCATCTGCGG CCCCGCGACCTTCTGGGCCGATGCGCCGGGCGTTATCGGCCAGCCCGCGATGGTCATCGCCGCGCTCGCCATTCTCTTCG CGCGCCAGCGGATCGCTCCGGCGGGCATTCCGCCGCGCCTCTTCGCGCGCGCCGCCGACAGGGCGACGCGCGGCAACAGT CCCTATCTGGCCGACCTGATCGCCGCGCCCGGCCATGCCGCGGAAAAGTTCCAGCATCTGATGCCCGCGACCGCGCACCG TCATGCGGCGCCCGCCGACGCCTTTCACGCCGCGCGCATCGGCGCGACGCTCGCCGCCGACTGCGGCCCGTGCGCGCTCA TCGCGGCCGACGCGGCGGTCGGCGACGGCGTGCCGCGGGCGACCGTCAACCGCCTGCTCGCCGGCACACCGCCGCCCGCG CTGGCCGACGCCTTTGCGTTCGGCCGCGGGGTCGCCGCCCACGATTTCTCGGCTGATGAGGCAGGCGCGCGGATCGAGGC CGCGCTCGGCCGAACCGTCCGCTTTGAGCTGGCGCTGACCGCCGCGACCGTGACAGCCTATCCCGCGCTCAAGCGCGGGC TCGGCTACGCCACCTCCTGCGCGCTTCACAAACTTGAGGTTTGA
Upstream 100 bases:
>100_bases ATCGGTCGCAAGCCGCCGCTCCCGGAACACCCAATCCCTTTTACATCCCTGTCAGCAACGATTAATCTCTCCGCATCGTC AACGGGGGGAGAGGAAATCC
Downstream 100 bases:
>100_bases CAGCGGACCGAGCGCCCGACAGAGCCGCCCCATGACGCTCGCCATCCGCCCCGCCACCCGTGCCGACCTGCCGCTGATCG CCGAGTTCATCCGCGACCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MLGRFDALDRLVQLLLLAAGLGAVANGAFMLIDPLEWYVFIPTVVTTGPPNAHFIRDIGLAYLGSGAILVYAAAHPILRW RAALVGGLWLTLHGLLHIYEVLAGICGPATFWADAPGVIGQPAMVIAALAILFARQRIAPAGIPPRLFARAADRATRGNS PYLADLIAAPGHAAEKFQHLMPATAHRHAAPADAFHAARIGATLAADCGPCALIAADAAVGDGVPRATVNRLLAGTPPPA LADAFAFGRGVAAHDFSADEAGARIEAALGRTVRFELALTAATVTAYPALKRGLGYATSCALHKLEV
Sequences:
>Translated_307_residues MLGRFDALDRLVQLLLLAAGLGAVANGAFMLIDPLEWYVFIPTVVTTGPPNAHFIRDIGLAYLGSGAILVYAAAHPILRW RAALVGGLWLTLHGLLHIYEVLAGICGPATFWADAPGVIGQPAMVIAALAILFARQRIAPAGIPPRLFARAADRATRGNS PYLADLIAAPGHAAEKFQHLMPATAHRHAAPADAFHAARIGATLAADCGPCALIAADAAVGDGVPRATVNRLLAGTPPPA LADAFAFGRGVAAHDFSADEAGARIEAALGRTVRFELALTAATVTAYPALKRGLGYATSCALHKLEV >Mature_307_residues MLGRFDALDRLVQLLLLAAGLGAVANGAFMLIDPLEWYVFIPTVVTTGPPNAHFIRDIGLAYLGSGAILVYAAAHPILRW RAALVGGLWLTLHGLLHIYEVLAGICGPATFWADAPGVIGQPAMVIAALAILFARQRIAPAGIPPRLFARAADRATRGNS PYLADLIAAPGHAAEKFQHLMPATAHRHAAPADAFHAARIGATLAADCGPCALIAADAAVGDGVPRATVNRLLAGTPPPA LADAFAFGRGVAAHDFSADEAGARIEAALGRTVRFELALTAATVTAYPALKRGLGYATSCALHKLEV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31813; Mature: 31813
Theoretical pI: Translated: 8.35; Mature: 8.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGRFDALDRLVQLLLLAAGLGAVANGAFMLIDPLEWYVFIPTVVTTGPPNAHFIRDIGL CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCEECCCCCHHHHHHHHH AYLGSGAILVYAAAHPILRWRAALVGGLWLTLHGLLHIYEVLAGICGPATFWADAPGVIG HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCC QPAMVIAALAILFARQRIAPAGIPPRLFARAADRATRGNSPYLADLIAAPGHAAEKFQHL CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHH MPATAHRHAAPADAFHAARIGATLAADCGPCALIAADAAVGDGVPRATVNRLLAGTPPPA CCHHHHHCCCCHHHHHHHHHCCHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHCCCCCHH LADAFAFGRGVAAHDFSADEAGARIEAALGRTVRFELALTAATVTAYPALKRGLGYATSC HHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCEEEEEEEEHHHHHHHHHHHHHCCCHHHHH ALHKLEV HHHHCCC >Mature Secondary Structure MLGRFDALDRLVQLLLLAAGLGAVANGAFMLIDPLEWYVFIPTVVTTGPPNAHFIRDIGL CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCEECCCCCHHHHHHHHH AYLGSGAILVYAAAHPILRWRAALVGGLWLTLHGLLHIYEVLAGICGPATFWADAPGVIG HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCC QPAMVIAALAILFARQRIAPAGIPPRLFARAADRATRGNSPYLADLIAAPGHAAEKFQHL CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHH MPATAHRHAAPADAFHAARIGATLAADCGPCALIAADAAVGDGVPRATVNRLLAGTPPPA CCHHHHHCCCCHHHHHHHHHCCHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHCCCCCHH LADAFAFGRGVAAHDFSADEAGARIEAALGRTVRFELALTAATVTAYPALKRGLGYATSC HHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCEEEEEEEEHHHHHHHHHHHHHCCCHHHHH ALHKLEV HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA