| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487278
Identifier: 103487278
GI number: 103487278
Start: 1890124
End: 1890288
Strand: Direct
Name: 103487278
Synonym: Sala_1794
Alternate gene names: NA
Gene position: 1890124-1890288 (Clockwise)
Preceding gene: 103487277
Following gene: 103487283
Centisome position: 56.5
GC content: 55.15
Gene sequence:
>165_bases ATGAAGTTCATCAAGAAGTTCGTTCGCGATACCAAAGCCGCCACCGCCATCGAATATGGCCTGATCGCGGCCCTCATCGC CGTCGCCGGCATCTCGGCCATGGGCCTTGTTGGTAACAGCGTCAGCAACACCTTCAACGAAGTTTCGACCGAGCTGAACA AGTAA
Upstream 100 bases:
>100_bases GCAAAAGCCCATTAAGATTTTCAAAACCTATTCGACCTAAACCGTTCATGTTGACCCAGACCAGACCGTCAACAGGGTAA GTGAAATCAGGAGACCAGTC
Downstream 100 bases:
>100_bases GCTCGCGCGTCGAACACGCCGCTCCTGCGGCGTGTCGATCGAAAAGAAAGGGGCGGTGGGTCATCCCACCGCCCTTTTTC ATGCGCCACGCCTACCGGCC
Product: Flp/Fap pilin component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 54; Mature: 54
Protein sequence:
>54_residues MKFIKKFVRDTKAATAIEYGLIAALIAVAGISAMGLVGNSVSNTFNEVSTELNK
Sequences:
>Translated_54_residues MKFIKKFVRDTKAATAIEYGLIAALIAVAGISAMGLVGNSVSNTFNEVSTELNK >Mature_54_residues MKFIKKFVRDTKAATAIEYGLIAALIAVAGISAMGLVGNSVSNTFNEVSTELNK
Specific function: Unknown
COG id: COG3847
COG function: function code U; Flp pilus assembly protein, pilin Flp
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 5705; Mature: 5705
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFIKKFVRDTKAATAIEYGLIAALIAVAGISAMGLVGNSVSNTFNEVSTELNK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC >Mature Secondary Structure MKFIKKFVRDTKAATAIEYGLIAALIAVAGISAMGLVGNSVSNTFNEVSTELNK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA