| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487193
Identifier: 103487193
GI number: 103487193
Start: 1798882
End: 1799061
Strand: Direct
Name: 103487193
Synonym: Sala_1708
Alternate gene names: NA
Gene position: 1798882-1799061 (Clockwise)
Preceding gene: 103487190
Following gene: 103487196
Centisome position: 53.78
GC content: 61.11
Gene sequence:
>180_bases ATGAAACAGGGTTTTCGCAAGAATCGCCAGGGTGGCATCCTCTTCGGTGTATGCGCCGGAATGGCGGACCACTTCGGCTT CGATGTCTTGTGGACGCGCGTCGCCTTTGTCGCCCTGACGCTCCTCGGCTTCGGCCTGCCGCTGCTGCTCTATCTGACCG TCGCGATCCTCGCGCCATAA
Upstream 100 bases:
>100_bases GGCCAGAATGGCGCTGAGGTTGGTCAGCTGATCGTCTGATCGGCTGACGACATCTCCCCAAAGAACGCCGGCCCCTCGGG TCGGGATCGAAAGGAAAGAA
Downstream 100 bases:
>100_bases GGCAGCCAGGGCCGGTCGCCAAAGGCGCCCCGTTCACCGGCCCCCATTCCCGAAATCGAGGGCTCACCGGCCGCCGCCGG TGGGCCCTTTCGATTATCCG
Product: phage shock protein C, PspC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 59; Mature: 59
Protein sequence:
>59_residues MKQGFRKNRQGGILFGVCAGMADHFGFDVLWTRVAFVALTLLGFGLPLLLYLTVAILAP
Sequences:
>Translated_59_residues MKQGFRKNRQGGILFGVCAGMADHFGFDVLWTRVAFVALTLLGFGLPLLLYLTVAILAP >Mature_59_residues MKQGFRKNRQGGILFGVCAGMADHFGFDVLWTRVAFVALTLLGFGLPLLLYLTVAILAP
Specific function: Unknown
COG id: COG1983
COG function: function code KT; Putative stress-responsive transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 6426; Mature: 6426
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQGFRKNRQGGILFGVCAGMADHFGFDVLWTRVAFVALTLLGFGLPLLLYLTVAILAP CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKQGFRKNRQGGILFGVCAGMADHFGFDVLWTRVAFVALTLLGFGLPLLLYLTVAILAP CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA