| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yoaT [H]
Identifier: 103487129
GI number: 103487129
Start: 1726873
End: 1727730
Strand: Direct
Name: yoaT [H]
Synonym: Sala_1644
Alternate gene names: 103487129
Gene position: 1726873-1727730 (Clockwise)
Preceding gene: 103487128
Following gene: 103487134
Centisome position: 51.62
GC content: 63.52
Gene sequence:
>858_bases ATGTCTGACGGCGCGCGCGGCCACAGCCGCTTCCACGCCGTTCGCTCGCGGCTCGAGGCGATGGCGGTCGAACCGGGACC GCGCGGCTGGTTCCTCGAGTTCCTCGTCTTCGGATTCAAACAGGGGTGGGCGTGCCTGTTCGGCGGCCTGATGCTCGCGC TGCTGCTCGGCACGCATTTCTTCTGGCCCGACGATGCGCCGCTCCACCGCTATGATGCGATCACCATCGGCGCGGTGCTG ATCCAGCTCGCGATGCTTGCCTTCCGGCTTGAAACGCCGAAGGAGGCGCTGGTCATCCTGATCTTCCACATCGTCGGCAC GGTGATGGAGCTGTTCAAGACCGCGGCGGGATCGTGGCAATATCCCGAGGCGAGTCTGCTTCATATCGGCGCGGTGCCGC TGTTCTCGGGTTTCATGTATGCCGCCGTCGGCAGCTATATCGCGCGCGTATGGCGCATCTTCGACTTTCGCTACACCGGC TATCCGCCCGCGTGGACGAGCTATGTGCTGGCAGCGGCGATCTATATCAATTTTTTCGCGCACCATTGGACCTATGACAT CCGCTGGTTCCTCTTCGCGGCCACCGGCCTGCTCTTCTGGCGCTGTCAGGTCTGGTTCCGCCCGCTCCACGTCCACCGGC GGATGCCCCTGCTCGTCGGCTGGGGGCTGGTCGCGCTGTTCATCTGGTTCGCCGAAAATATCGGGACGTTTGCGCGCGCC TGGACCTATCCCAGCCAGAATGACGGCTGGCATATGGTCGGGCTGGAAAAGCTCGGCAGCTGGTATCTGCTGATGATCAT CTCGTTCGTGCTGGTCAGTCTGGTGCAGCGGCCGAAAGGGCGGAGCACCGCTCCCTGA
Upstream 100 bases:
>100_bases CGCGCGATCACCTTCATTTCGCTCAGCCGCCTTGCCGGTACGATTCTCGCGCAGGCGTTGCTGCTACCCGCCGCAATGCT GATCGCATGGGTCGCCGTCC
Downstream 100 bases:
>100_bases CCATCGCCACCGCGTAGGCGGGGGCCGCCAGCGGTTTACTCCTCAATGCCGAGCAAGGCCGACAGCGGCCCCCGCCGTCG CGGGGGCGACGGGCTACGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSDGARGHSRFHAVRSRLEAMAVEPGPRGWFLEFLVFGFKQGWACLFGGLMLALLLGTHFFWPDDAPLHRYDAITIGAVL IQLAMLAFRLETPKEALVILIFHIVGTVMELFKTAAGSWQYPEASLLHIGAVPLFSGFMYAAVGSYIARVWRIFDFRYTG YPPAWTSYVLAAAIYINFFAHHWTYDIRWFLFAATGLLFWRCQVWFRPLHVHRRMPLLVGWGLVALFIWFAENIGTFARA WTYPSQNDGWHMVGLEKLGSWYLLMIISFVLVSLVQRPKGRSTAP
Sequences:
>Translated_285_residues MSDGARGHSRFHAVRSRLEAMAVEPGPRGWFLEFLVFGFKQGWACLFGGLMLALLLGTHFFWPDDAPLHRYDAITIGAVL IQLAMLAFRLETPKEALVILIFHIVGTVMELFKTAAGSWQYPEASLLHIGAVPLFSGFMYAAVGSYIARVWRIFDFRYTG YPPAWTSYVLAAAIYINFFAHHWTYDIRWFLFAATGLLFWRCQVWFRPLHVHRRMPLLVGWGLVALFIWFAENIGTFARA WTYPSQNDGWHMVGLEKLGSWYLLMIISFVLVSLVQRPKGRSTAP >Mature_284_residues SDGARGHSRFHAVRSRLEAMAVEPGPRGWFLEFLVFGFKQGWACLFGGLMLALLLGTHFFWPDDAPLHRYDAITIGAVLI QLAMLAFRLETPKEALVILIFHIVGTVMELFKTAAGSWQYPEASLLHIGAVPLFSGFMYAAVGSYIARVWRIFDFRYTGY PPAWTSYVLAAAIYINFFAHHWTYDIRWFLFAATGLLFWRCQVWFRPLHVHRRMPLLVGWGLVALFIWFAENIGTFARAW TYPSQNDGWHMVGLEKLGSWYLLMIISFVLVSLVQRPKGRSTAP
Specific function: Unknown
COG id: COG3739
COG function: function code S; Uncharacterized integral membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008535 [H]
Pfam domain/function: PF05675 DUF817 [H]
EC number: NA
Molecular weight: Translated: 32645; Mature: 32514
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDGARGHSRFHAVRSRLEAMAVEPGPRGWFLEFLVFGFKQGWACLFGGLMLALLLGTHF CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC FWPDDAPLHRYDAITIGAVLIQLAMLAFRLETPKEALVILIFHIVGTVMELFKTAAGSWQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC YPEASLLHIGAVPLFSGFMYAAVGSYIARVWRIFDFRYTGYPPAWTSYVLAAAIYINFFA CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH HHWTYDIRWFLFAATGLLFWRCQVWFRPLHVHRRMPLLVGWGLVALFIWFAENIGTFARA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH WTYPSQNDGWHMVGLEKLGSWYLLMIISFVLVSLVQRPKGRSTAP CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SDGARGHSRFHAVRSRLEAMAVEPGPRGWFLEFLVFGFKQGWACLFGGLMLALLLGTHF CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC FWPDDAPLHRYDAITIGAVLIQLAMLAFRLETPKEALVILIFHIVGTVMELFKTAAGSWQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC YPEASLLHIGAVPLFSGFMYAAVGSYIARVWRIFDFRYTGYPPAWTSYVLAAAIYINFFA CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH HHWTYDIRWFLFAATGLLFWRCQVWFRPLHVHRRMPLLVGWGLVALFIWFAENIGTFARA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH WTYPSQNDGWHMVGLEKLGSWYLLMIISFVLVSLVQRPKGRSTAP CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]