Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is fabI1 [H]
Identifier: 103486150
GI number: 103486150
Start: 668161
End: 668988
Strand: Direct
Name: fabI1 [H]
Synonym: Sala_0657
Alternate gene names: 103486150
Gene position: 668161-668988 (Clockwise)
Preceding gene: 103486149
Following gene: 103486151
Centisome position: 19.97
GC content: 61.96
Gene sequence:
>828_bases ATGACGGGTCTGATGAAGGGCAAACGCGGGCTGATCATGGGGCTGGCGAACGACAAATCGCTCGCCTGGGGCATTGCGAA GGCGCTGCACGCGCATGGCGCGGAGCTTGCGCTCTCCTATCAGGGCGAGGTGATGGCAAAGCGCGTCAAGCCGCTTGCCG ACCAGCTTGGCTGCGATTTCCTGATCGATTGCGACGTGTCCGACATGGACAATCTCGACGCAGCGTTCGGGTCGCTCGCC GCGCGCTGGCCGACGATCGATTTTGTGGTCCACGCGATCGGCTATACCAACAAGGAAGCGCTGCGGGGCCATTATGCCGA TGTGACGCTCGACGATTTCCTGATGACGATGAATATCAGCGTTTACAGCTTCACCGCGGTCGCGAAGCGCGCGGCGGCGA TGATGGCGCCCTTCGACCCTGAAACGGGCGCCGGCGGCGGCTCGCTGCTGACGCTCAGCTATTATGGCGCCGAAAAGGTC ATCCCGCATTATAACGTCATGGGCGTCGCGAAGTCGGCGCTCGAAACCAGCGTCAAATATCTTGCCAATGATTACGGGCC GCAGGGGGTGCGCGTGAACGCGATCTCGGCAGGGCCGATCAAGACGCTCGCAGCGTCGGGCATCGGCGATTTCCGCCTGA TCCTGAAATGGAACGAATATAACGCGCCGCTGCGCCGCAACGTCACGATCGACGATGTGGGCGGCTCGGCGCTCTATCTC CTGAGCGATCTGGCGAGCGGCGTGACAGGCGAAACGCACCACGTCGATGCGGGTTATCACACCATCGGCATGAAGCAGGA AGATGCGCCGGACATCGCGCTTGCGTGA
Upstream 100 bases:
>100_bases TCAACGCCGCGCTCGTCGAGGTTGAGGATTTGGGCCACGACGCTATGGGGCGCGTGGACGACGTGACAGTCGACGATAAA TAAGGCCGGAGAAAACGGAA
Downstream 100 bases:
>100_bases TGGTTGATCTGACCATCGATCATGTTCAGCTTGCCATCCCCATCGGCGGTGAAGATGCGGCGCGGAGTTTTTATGGCGTA TTGCTGGGCTTGAGTGAATT
Product: enoyl-acyl-carrier-protein reductase
Products: NA
Alternate protein names: NADH-dependent enoyl-ACP reductase 1 [H]
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MTGLMKGKRGLIMGLANDKSLAWGIAKALHAHGAELALSYQGEVMAKRVKPLADQLGCDFLIDCDVSDMDNLDAAFGSLA ARWPTIDFVVHAIGYTNKEALRGHYADVTLDDFLMTMNISVYSFTAVAKRAAAMMAPFDPETGAGGGSLLTLSYYGAEKV IPHYNVMGVAKSALETSVKYLANDYGPQGVRVNAISAGPIKTLAASGIGDFRLILKWNEYNAPLRRNVTIDDVGGSALYL LSDLASGVTGETHHVDAGYHTIGMKQEDAPDIALA
Sequences:
>Translated_275_residues MTGLMKGKRGLIMGLANDKSLAWGIAKALHAHGAELALSYQGEVMAKRVKPLADQLGCDFLIDCDVSDMDNLDAAFGSLA ARWPTIDFVVHAIGYTNKEALRGHYADVTLDDFLMTMNISVYSFTAVAKRAAAMMAPFDPETGAGGGSLLTLSYYGAEKV IPHYNVMGVAKSALETSVKYLANDYGPQGVRVNAISAGPIKTLAASGIGDFRLILKWNEYNAPLRRNVTIDDVGGSALYL LSDLASGVTGETHHVDAGYHTIGMKQEDAPDIALA >Mature_274_residues TGLMKGKRGLIMGLANDKSLAWGIAKALHAHGAELALSYQGEVMAKRVKPLADQLGCDFLIDCDVSDMDNLDAAFGSLAA RWPTIDFVVHAIGYTNKEALRGHYADVTLDDFLMTMNISVYSFTAVAKRAAAMMAPFDPETGAGGGSLLTLSYYGAEKVI PHYNVMGVAKSALETSVKYLANDYGPQGVRVNAISAGPIKTLAASGIGDFRLILKWNEYNAPLRRNVTIDDVGGSALYLL SDLASGVTGETHHVDAGYHTIGMKQEDAPDIALA
Specific function: Fatty acid biosynthesis pathway; second reduction step. [C]
COG id: COG0623
COG function: function code I; Enoyl-[acyl-carrier-protein] reductase (NADH)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family. FabI subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787545, Length=265, Percent_Identity=49.4339622641509, Blast_Score=261, Evalue=5e-71, Organism=Escherichia coli, GI87082100, Length=269, Percent_Identity=27.5092936802974, Blast_Score=63, Evalue=3e-11,
Paralogues:
None
Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR014358 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.3.1.9 [H]
Molecular weight: Translated: 29289; Mature: 29158
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGLMKGKRGLIMGLANDKSLAWGIAKALHAHGAELALSYQGEVMAKRVKPLADQLGCDF CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCE LIDCDVSDMDNLDAAFGSLAARWPTIDFVVHAIGYTNKEALRGHYADVTLDDFLMTMNIS EEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHCCCCCCCCHHHEEEEEECH VYSFTAVAKRAAAMMAPFDPETGAGGGSLLTLSYYGAEKVIPHYNVMGVAKSALETSVKY HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH LANDYGPQGVRVNAISAGPIKTLAASGIGDFRLILKWNEYNAPLRRNVTIDDVGGSALYL HHHCCCCCCEEEEEECCCCHHHHHHCCCCCEEEEEEECCCCCCEECCCEEECCCCHHHHH LSDLASGVTGETHHVDAGYHTIGMKQEDAPDIALA HHHHHCCCCCCCEEECCCEEEECCCCCCCCCCCCC >Mature Secondary Structure TGLMKGKRGLIMGLANDKSLAWGIAKALHAHGAELALSYQGEVMAKRVKPLADQLGCDF CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCE LIDCDVSDMDNLDAAFGSLAARWPTIDFVVHAIGYTNKEALRGHYADVTLDDFLMTMNIS EEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHCCCCCCCCHHHEEEEEECH VYSFTAVAKRAAAMMAPFDPETGAGGGSLLTLSYYGAEKVIPHYNVMGVAKSALETSVKY HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH LANDYGPQGVRVNAISAGPIKTLAASGIGDFRLILKWNEYNAPLRRNVTIDDVGGSALYL HHHCCCCCCEEEEEECCCCHHHHHHCCCCCEEEEEEECCCCCCEECCCEEECCCCHHHHH LSDLASGVTGETHHVDAGYHTIGMKQEDAPDIALA HHHHHCCCCCCCEEECCCEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]