| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is cbpA [C]
Identifier: 103486148
GI number: 103486148
Start: 666155
End: 667072
Strand: Direct
Name: cbpA [C]
Synonym: Sala_0655
Alternate gene names: 103486148
Gene position: 666155-667072 (Clockwise)
Preceding gene: 103486145
Following gene: 103486149
Centisome position: 19.91
GC content: 66.99
Gene sequence:
>918_bases ATGGCCGATCCCTATTCCACCCTGGGCGTTGCGAAGACCGCGAGCGAAGCCGAGATCAAGTCCGCCTATCGCAAACTCGC CAAGGAATTGCACCCCGACAAGAACAAGGACAATCCGAAGGCGTCGGAACGCTTTTCCGACGTGACCAAGGCCTATGACC TGCTTTCCGACAAGGCGAAGCGTGCGCAGTTCGACCGCGGCGAGATCGACGCCGACGGCAATCCGGCGATGCCCTTTGGC TATGGCGGCGCTGGTTTTCGGGGCGACCCGCGCGCGCAAGGAGGATTTTCCGGTTTCGGCAACGACGGCGCCGATTTCGG TGATATTTTCGAAGGATTGTTCGGCGGTCGCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCCGCAGCGCGCCGCCGCCCA GGGGCGCCAACATCCCCTATCGCCTGTCGGTATCCTTTATCGATGCGGCGACGCAGGCGCCGCAGCGGATCACGCTGGCC GATGGCGGCACGATCGACCTCAAACTACCCGCGGGTGTCGAGACGGGGACGCAGATGCGCCTTGCCGGCAAGGGGCAGCC GGGACCGGGCGGCCATGGCGACGCGATCGTGACGATCACGGTCAAGGACCACCCCTTTTTCGTGCGCGACGGCGCCAACA TCCGCCTCGACCTGCCCGTCACGCTGGCCGAGGCGGTGAAGGGCGCGAAGGTGAAGGTGCCGACGGTCGACGGCCCGGTG ATGCTGTCGATCCCCGCGGGCTCCTCGTCGGGCAAGGTCATGCGGCTCAAGGGCAAGGGGTTCAGCCAGAAGAGCGGCGG CCGCGGCGACCAGCTGGTGCGGATCATGGTCGACCTGCCCGCAGACGACGCTGCGCTGGTCAAGCTGCTCGGCGAATGGA ACGATCCGCGCAACGTGCGGGCGGACCTCGGCGTGTGA
Upstream 100 bases:
>100_bases GTCGAGCGACATGTGCGGAACTTGACCGCCGCCGCACGCATTCCCACATGCGCGCGCAATGGGCCTTCACGGCCAGTCAC TAATCGGGCACAGGAGCAAG
Downstream 100 bases:
>100_bases TGCGTGGCTGAGGTCAGGGATAACGGACGCGCGGCGGCGCTGGAGCGCGAGGTCGCCGACGAGGTCGGCAAGGAGTTTCT GGCCGAAGGCCATTCGCCCG
Product: chaperone DnaJ-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MADPYSTLGVAKTASEAEIKSAYRKLAKELHPDKNKDNPKASERFSDVTKAYDLLSDKAKRAQFDRGEIDADGNPAMPFG YGGAGFRGDPRAQGGFSGFGNDGADFGDIFEGLFGGRGGGPFGGFGGRSAPPPRGANIPYRLSVSFIDAATQAPQRITLA DGGTIDLKLPAGVETGTQMRLAGKGQPGPGGHGDAIVTITVKDHPFFVRDGANIRLDLPVTLAEAVKGAKVKVPTVDGPV MLSIPAGSSSGKVMRLKGKGFSQKSGGRGDQLVRIMVDLPADDAALVKLLGEWNDPRNVRADLGV
Sequences:
>Translated_305_residues MADPYSTLGVAKTASEAEIKSAYRKLAKELHPDKNKDNPKASERFSDVTKAYDLLSDKAKRAQFDRGEIDADGNPAMPFG YGGAGFRGDPRAQGGFSGFGNDGADFGDIFEGLFGGRGGGPFGGFGGRSAPPPRGANIPYRLSVSFIDAATQAPQRITLA DGGTIDLKLPAGVETGTQMRLAGKGQPGPGGHGDAIVTITVKDHPFFVRDGANIRLDLPVTLAEAVKGAKVKVPTVDGPV MLSIPAGSSSGKVMRLKGKGFSQKSGGRGDQLVRIMVDLPADDAALVKLLGEWNDPRNVRADLGV >Mature_304_residues ADPYSTLGVAKTASEAEIKSAYRKLAKELHPDKNKDNPKASERFSDVTKAYDLLSDKAKRAQFDRGEIDADGNPAMPFGY GGAGFRGDPRAQGGFSGFGNDGADFGDIFEGLFGGRGGGPFGGFGGRSAPPPRGANIPYRLSVSFIDAATQAPQRITLAD GGTIDLKLPAGVETGTQMRLAGKGQPGPGGHGDAIVTITVKDHPFFVRDGANIRLDLPVTLAEAVKGAKVKVPTVDGPVM LSIPAGSSSGKVMRLKGKGFSQKSGGRGDQLVRIMVDLPADDAALVKLLGEWNDPRNVRADLGV
Specific function: DNA-Binding Protein That Preferentially Recognizes A Curved DNA Sequence. It Is Probably A Functional Analog Of Dnaj; Displays Overlapping Activities With Dnaj, But Functions Under Different Conditions, Probably Acting As A Molecular Chaperone In An Adapt
COG id: COG2214
COG function: function code O; DnaJ-class molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI205360838, Length=342, Percent_Identity=28.6549707602339, Blast_Score=119, Evalue=5e-27, Organism=Homo sapiens, GI205360840, Length=342, Percent_Identity=28.6549707602339, Blast_Score=118, Evalue=6e-27, Organism=Homo sapiens, GI6631085, Length=328, Percent_Identity=32.0121951219512, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI201862587, Length=337, Percent_Identity=31.4540059347181, Blast_Score=109, Evalue=4e-24, Organism=Homo sapiens, GI201862518, Length=337, Percent_Identity=31.4540059347181, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI56549115, Length=337, Percent_Identity=31.4540059347181, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI7706495, Length=316, Percent_Identity=27.8481012658228, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI5453690, Length=324, Percent_Identity=30.8641975308642, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI39204547, Length=267, Percent_Identity=30.3370786516854, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI56687498, Length=64, Percent_Identity=56.25, Blast_Score=82, Evalue=9e-16, Organism=Homo sapiens, GI4504511, Length=329, Percent_Identity=24.3161094224924, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI194328760, Length=155, Percent_Identity=33.5483870967742, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI23503241, Length=72, Percent_Identity=50, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI194328758, Length=155, Percent_Identity=33.5483870967742, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI47777312, Length=118, Percent_Identity=41.5254237288136, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI24308127, Length=64, Percent_Identity=50, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI88501736, Length=140, Percent_Identity=38.5714285714286, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI27151736, Length=140, Percent_Identity=38.5714285714286, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI68077168, Length=125, Percent_Identity=36.8, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI68077166, Length=125, Percent_Identity=36.8, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI4885495, Length=67, Percent_Identity=50.7462686567164, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI17388799, Length=67, Percent_Identity=50.7462686567164, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI29126218, Length=62, Percent_Identity=48.3870967741936, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI5031741, Length=62, Percent_Identity=53.2258064516129, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI8922563, Length=64, Percent_Identity=45.3125, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI21553335, Length=126, Percent_Identity=34.1269841269841, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI45504382, Length=62, Percent_Identity=45.1612903225806, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1787235, Length=325, Percent_Identity=31.6923076923077, Blast_Score=146, Evalue=1e-36, Organism=Escherichia coli, GI1786197, Length=150, Percent_Identity=39.3333333333333, Blast_Score=108, Evalue=3e-25, Organism=Caenorhabditis elegans, GI212645553, Length=271, Percent_Identity=29.520295202952, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17534355, Length=317, Percent_Identity=29.3375394321767, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17553096, Length=338, Percent_Identity=29.8816568047337, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17553098, Length=338, Percent_Identity=29.8816568047337, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17554644, Length=63, Percent_Identity=58.7301587301587, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI115532476, Length=64, Percent_Identity=51.5625, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI86563276, Length=125, Percent_Identity=37.6, Blast_Score=70, Evalue=9e-13, Organism=Saccharomyces cerevisiae, GI6324321, Length=337, Percent_Identity=25.2225519287834, Blast_Score=73, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6323813, Length=131, Percent_Identity=41.9847328244275, Blast_Score=73, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6323870, Length=72, Percent_Identity=47.2222222222222, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322194, Length=123, Percent_Identity=35.7723577235772, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI85726398, Length=336, Percent_Identity=30.0595238095238, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI18858081, Length=329, Percent_Identity=30.0911854103343, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI24658562, Length=324, Percent_Identity=29.9382716049383, Blast_Score=101, Evalue=5e-22, Organism=Drosophila melanogaster, GI24658555, Length=324, Percent_Identity=29.9382716049383, Blast_Score=101, Evalue=5e-22, Organism=Drosophila melanogaster, GI19920464, Length=324, Percent_Identity=27.1604938271605, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI45549272, Length=63, Percent_Identity=52.3809523809524, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI45552813, Length=63, Percent_Identity=52.3809523809524, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI45552811, Length=63, Percent_Identity=52.3809523809524, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24654066, Length=114, Percent_Identity=38.5964912280702, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24654070, Length=114, Percent_Identity=38.5964912280702, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24654068, Length=114, Percent_Identity=38.5964912280702, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24654072, Length=114, Percent_Identity=38.5964912280702, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24645889, Length=62, Percent_Identity=50, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI161077138, Length=66, Percent_Identity=48.4848484848485, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24668523, Length=62, Percent_Identity=48.3870967741936, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI17737735, Length=62, Percent_Identity=48.3870967741936, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI28574723, Length=62, Percent_Identity=48.3870967741936, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24668492, Length=81, Percent_Identity=41.9753086419753, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI20129487, Length=62, Percent_Identity=51.6129032258064, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI24584014, Length=62, Percent_Identity=51.6129032258064, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]
EC number: NA
Molecular weight: Translated: 31794; Mature: 31663
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADPYSTLGVAKTASEAEIKSAYRKLAKELHPDKNKDNPKASERFSDVTKAYDLLSDKAK CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH RAQFDRGEIDADGNPAMPFGYGGAGFRGDPRAQGGFSGFGNDGADFGDIFEGLFGGRGGG HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC PFGGFGGRSAPPPRGANIPYRLSVSFIDAATQAPQRITLADGGTIDLKLPAGVETGTQMR CCCCCCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCEEEEECCCEEEEEECCCCCCCCEEE LAGKGQPGPGGHGDAIVTITVKDHPFFVRDGANIRLDLPVTLAEAVKGAKVKVPTVDGPV EECCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEEECCEEHHHHHCCCEEEECCCCCCE MLSIPAGSSSGKVMRLKGKGFSQKSGGRGDQLVRIMVDLPADDAALVKLLGEWNDPRNVR EEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCE ADLGV ECCCC >Mature Secondary Structure ADPYSTLGVAKTASEAEIKSAYRKLAKELHPDKNKDNPKASERFSDVTKAYDLLSDKAK CCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH RAQFDRGEIDADGNPAMPFGYGGAGFRGDPRAQGGFSGFGNDGADFGDIFEGLFGGRGGG HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC PFGGFGGRSAPPPRGANIPYRLSVSFIDAATQAPQRITLADGGTIDLKLPAGVETGTQMR CCCCCCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCEEEEECCCEEEEEECCCCCCCCEEE LAGKGQPGPGGHGDAIVTITVKDHPFFVRDGANIRLDLPVTLAEAVKGAKVKVPTVDGPV EECCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEEECCEEHHHHHCCCEEEECCCCCCE MLSIPAGSSSGKVMRLKGKGFSQKSGGRGDQLVRIMVDLPADDAALVKLLGEWNDPRNVR EEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCE ADLGV ECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]