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The map label for this gene is yybR [H]

Identifier: 103486126

GI number: 103486126

Start: 643328

End: 643672

Strand: Direct

Name: yybR [H]

Synonym: Sala_0633

Alternate gene names: 103486126

Gene position: 643328-643672 (Clockwise)

Preceding gene: 103486123

Following gene: 103486128

Centisome position: 19.23

GC content: 63.19

Gene sequence:

>345_bases
ATGAAAGAGCTGGTTTCACGCTGTCCGATCGAGGAGGTGATGCAGCTACTGGGCGGCCGCTGGCCCAGCCTGCTGATCTA
TTATCTCAGCGACGGGACCAAGCGGTTCAGCGACCTGCAACGCGACAATCCGACGATCTCGCACAAGATGCTGACGCTCG
AACTGCGCAAGCTCGAGGATGCGGGGATCGTTCGCCGCACTGACTTCGACGGCTATCCGCGCCGCGTCGAATATGGCCTG
ACCGAGGATGGCGAAAGGCTGGTGCCGCTGATCGACGCGCTTGGCGACTGGTGGGGTTCGATGGTTGCCGCACCAGCGGA
CGCGACCGTGGTCGCCGCGGACTAG

Upstream 100 bases:

>100_bases
CATCGTCCTGTAAAGGAGGGGGAGCTGCGCAGCGATTTCGGATATAGGGCGTCCGTTCGCCGCGTAAATTACGCACCTTT
TTGTAACCATGAGGGCGATG

Downstream 100 bases:

>100_bases
CGCGTCACTCCCACTCGATCGTCCCCGGCGGCTTCGACGTATAATCATACACCACCCGGTTGATGCCCTGCACCTCGTTG
ATGATGCGCGTCGCGCAGCG

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MKELVSRCPIEEVMQLLGGRWPSLLIYYLSDGTKRFSDLQRDNPTISHKMLTLELRKLEDAGIVRRTDFDGYPRRVEYGL
TEDGERLVPLIDALGDWWGSMVAAPADATVVAAD

Sequences:

>Translated_114_residues
MKELVSRCPIEEVMQLLGGRWPSLLIYYLSDGTKRFSDLQRDNPTISHKMLTLELRKLEDAGIVRRTDFDGYPRRVEYGL
TEDGERLVPLIDALGDWWGSMVAAPADATVVAAD
>Mature_114_residues
MKELVSRCPIEEVMQLLGGRWPSLLIYYLSDGTKRFSDLQRDNPTISHKMLTLELRKLEDAGIVRRTDFDGYPRRVEYGL
TEDGERLVPLIDALGDWWGSMVAAPADATVVAAD

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=91, Percent_Identity=40.6593406593407, Blast_Score=74, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12883; Mature: 12883

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKELVSRCPIEEVMQLLGGRWPSLLIYYLSDGTKRFSDLQRDNPTISHKMLTLELRKLED
CCHHHHHCCHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHCCC
AGIVRRTDFDGYPRRVEYGLTEDGERLVPLIDALGDWWGSMVAAPADATVVAAD
CCCEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECC
>Mature Secondary Structure
MKELVSRCPIEEVMQLLGGRWPSLLIYYLSDGTKRFSDLQRDNPTISHKMLTLELRKLED
CCHHHHHCCHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHCCC
AGIVRRTDFDGYPRRVEYGLTEDGERLVPLIDALGDWWGSMVAAPADATVVAAD
CCCEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]