Definition | Sphingopyxis alaskensis RB2256, complete genome. |
---|---|
Accession | NC_008048 |
Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is modB [H]
Identifier: 103486044
GI number: 103486044
Start: 566359
End: 567054
Strand: Direct
Name: modB [H]
Synonym: Sala_0551
Alternate gene names: 103486044
Gene position: 566359-567054 (Clockwise)
Preceding gene: 103486043
Following gene: 103486045
Centisome position: 16.93
GC content: 69.97
Gene sequence:
>696_bases ATGCTGACCGCCGAGGAATGGGGGATCGTCGCATTGTCGCTCAAGGTCGGCGGGCTCGCGGTGCTCGCGACGCTGCCGCT TGCCTTCGTTGTCGCGTGGACGCTCGCGCGCTATCGTTTCCCCGGCCGGATGCTCGTCGATGCGCTCGTCCATCTGCCGC TGGTGTTGCCGCCGGTCGTCACCGGCTGGCTGCTGCTCATCGCTTTCGGGCCGCTGGGGCCGGTCGGTGGCTGGCTCGAA CGCTGGTTTGGCCTTGCCCTGATGTTCCGCTGGACCGGCGCGGCGCTCGCGGCGGCGATCATGGCGCTGCCGCTGATGGT GCGCGCGATGCGGCTGTCTATCGAGGGGATCGACCGGCGGCTGGAGGGCGCGGCGCGGACGCTCGGGGCTGGGCGCTGGC ACGCCTTTCGCACGATCAGCCTGCCGCTCGCGCTTCCGGGCATCCTCGCCGCGCTGGTGCTCGGCTTCGCGCGCTCGATC GGCGAGTTTGGCGCGACGATCACCTTTGTCTCGAACATTCCGGGCGAAACGCGCACGCTGCCGCTCGCCATCTATTCGGC GTTGCAGGTGCCGGACGGCGAAGCGACGGTGACGCGGCTCGCGCTTTTGTCGGTTGCCCTGTCGCTCGGTGCGCTGCTCG CCTCCGAATGGCTGGTGCGGCGCAGCCATGTCGGACGGCGCGCGCATGACGATTGA
Upstream 100 bases:
>100_bases TGAAAACATCGCGGCACCGCGACGCCGCGGCCTTTCGTGCCTTCCTCTTGTCCAGCCAAGGCCGCGCGATATTTGCGCGC CACGGTTTTTCGGCGCCGTG
Downstream 100 bases:
>100_bases GATCGACGTCGAAAAACGACGTGGCGACCGCGTCATCGCCGCGCGCTTCTCAGCGGGGCCGGGGCTGACCGCGCTGTTCG GCCCGTCGGGTGTGGGCAAG
Product: molybdate ABC transporter permease
Products: ADP; phosphate; MoO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 231; Mature: 231
Protein sequence:
>231_residues MLTAEEWGIVALSLKVGGLAVLATLPLAFVVAWTLARYRFPGRMLVDALVHLPLVLPPVVTGWLLLIAFGPLGPVGGWLE RWFGLALMFRWTGAALAAAIMALPLMVRAMRLSIEGIDRRLEGAARTLGAGRWHAFRTISLPLALPGILAALVLGFARSI GEFGATITFVSNIPGETRTLPLAIYSALQVPDGEATVTRLALLSVALSLGALLASEWLVRRSHVGRRAHDD
Sequences:
>Translated_231_residues MLTAEEWGIVALSLKVGGLAVLATLPLAFVVAWTLARYRFPGRMLVDALVHLPLVLPPVVTGWLLLIAFGPLGPVGGWLE RWFGLALMFRWTGAALAAAIMALPLMVRAMRLSIEGIDRRLEGAARTLGAGRWHAFRTISLPLALPGILAALVLGFARSI GEFGATITFVSNIPGETRTLPLAIYSALQVPDGEATVTRLALLSVALSLGALLASEWLVRRSHVGRRAHDD >Mature_231_residues MLTAEEWGIVALSLKVGGLAVLATLPLAFVVAWTLARYRFPGRMLVDALVHLPLVLPPVVTGWLLLIAFGPLGPVGGWLE RWFGLALMFRWTGAALAAAIMALPLMVRAMRLSIEGIDRRLEGAARTLGAGRWHAFRTISLPLALPGILAALVLGFARSI GEFGATITFVSNIPGETRTLPLAIYSALQVPDGEATVTRLALLSVALSLGALLASEWLVRRSHVGRRAHDD
Specific function: Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4149
COG function: function code P; ABC-type molybdate transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1786980, Length=228, Percent_Identity=59.2105263157895, Blast_Score=234, Evalue=4e-63, Organism=Escherichia coli, GI1788764, Length=162, Percent_Identity=41.9753086419753, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI87082099, Length=220, Percent_Identity=33.6363636363636, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1787368, Length=211, Percent_Identity=31.7535545023697, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI1786254, Length=223, Percent_Identity=31.390134529148, Blast_Score=62, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR011867 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 24741; Mature: 24741
Theoretical pI: Translated: 11.62; Mature: 11.62
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTAEEWGIVALSLKVGGLAVLATLPLAFVVAWTLARYRFPGRMLVDALVHLPLVLPPVV CCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH TGWLLLIAFGPLGPVGGWLERWFGLALMFRWTGAALAAAIMALPLMVRAMRLSIEGIDRR HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEGAARTLGAGRWHAFRTISLPLALPGILAALVLGFARSIGEFGATITFVSNIPGETRTL HHHHHHHHCCCCHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHH PLAIYSALQVPDGEATVTRLALLSVALSLGALLASEWLVRRSHVGRRAHDD HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MLTAEEWGIVALSLKVGGLAVLATLPLAFVVAWTLARYRFPGRMLVDALVHLPLVLPPVV CCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH TGWLLLIAFGPLGPVGGWLERWFGLALMFRWTGAALAAAIMALPLMVRAMRLSIEGIDRR HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEGAARTLGAGRWHAFRTISLPLALPGILAALVLGFARSIGEFGATITFVSNIPGETRTL HHHHHHHHCCCCHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHH PLAIYSALQVPDGEATVTRLALLSVALSLGALLASEWLVRRSHVGRRAHDD HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; MoO42- [Periplasm]; H2O [C]
Specific reaction: ATP + MoO42- [Periplasm] + H2O = ADP + phosphate + MoO42- [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]