Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486033
Identifier: 103486033
GI number: 103486033
Start: 554154
End: 554615
Strand: Direct
Name: 103486033
Synonym: Sala_0540
Alternate gene names: NA
Gene position: 554154-554615 (Clockwise)
Preceding gene: 103486032
Following gene: 103486034
Centisome position: 16.57
GC content: 65.8
Gene sequence:
>462_bases ATGACGAATGGCAGAGGGTCAGCCTTAGTTCAGACTCACCCGGCTATGGAAGGCGCCATGAAGAACCTCGCACTCTCCCT GGCCGCTGCGCTCCTTCCCCTTTCGGTCGCGGCGGCCGACGAGCCCGTCAGGGAAGCGCGCGCGCTCGGCGTCGAATCGA GCATTGTGTTCCCCAGCGACAGTTCGATCCGCAACTGGCGCGCTGACGATGGCCGCGGCGTCTGGATCCAGGACCGCCGC GGCGACTGGTATTATGGCGCCTTTGCGGGCTATTGCCGCGACATCGACTTTGCGCACACGATCGGTGTCGAAACGCGCGG CGCGGCGCGGCTCGACCGCTTTTCGGCGATCATCGTGCGCGGTGAGCGCTGCCCTCTCGCCTCCTTCGTGACCTCCGCGC CGCCACCGTCGAAGCGGGACAAGTCGGAGGACATCATGGGCGAAAACCCGGCGGCAAATTGA
Upstream 100 bases:
>100_bases ATCACCTGGACCGGGCATGTGCGCGACACCGGGCTGTGGTCGATCCTGGCGGAGGAGTGGACGGGATAACAGGCTTCGTC ATTGCTTCGCTGCGCTCGCA
Downstream 100 bases:
>100_bases CAAGCGCCGCCCGGCGCGCCTAGCGCCGCGGCGATGAACGGCTGGATCATCCTCGACAAACCCGTGGGGCTGGGCTCGAC GCAGGCGGTCGGCGCGGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MTNGRGSALVQTHPAMEGAMKNLALSLAAALLPLSVAAADEPVREARALGVESSIVFPSDSSIRNWRADDGRGVWIQDRR GDWYYGAFAGYCRDIDFAHTIGVETRGAARLDRFSAIIVRGERCPLASFVTSAPPPSKRDKSEDIMGENPAAN
Sequences:
>Translated_153_residues MTNGRGSALVQTHPAMEGAMKNLALSLAAALLPLSVAAADEPVREARALGVESSIVFPSDSSIRNWRADDGRGVWIQDRR GDWYYGAFAGYCRDIDFAHTIGVETRGAARLDRFSAIIVRGERCPLASFVTSAPPPSKRDKSEDIMGENPAAN >Mature_152_residues TNGRGSALVQTHPAMEGAMKNLALSLAAALLPLSVAAADEPVREARALGVESSIVFPSDSSIRNWRADDGRGVWIQDRRG DWYYGAFAGYCRDIDFAHTIGVETRGAARLDRFSAIIVRGERCPLASFVTSAPPPSKRDKSEDIMGENPAAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16478; Mature: 16346
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNGRGSALVQTHPAMEGAMKNLALSLAAALLPLSVAAADEPVREARALGVESSIVFPSD CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEECCCC SSIRNWRADDGRGVWIQDRRGDWYYGAFAGYCRDIDFAHTIGVETRGAARLDRFSAIIVR CCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHCCCCHHHCCCCCCCCHHHHHHEEEEEE GERCPLASFVTSAPPPSKRDKSEDIMGENPAAN CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TNGRGSALVQTHPAMEGAMKNLALSLAAALLPLSVAAADEPVREARALGVESSIVFPSD CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEECCCC SSIRNWRADDGRGVWIQDRRGDWYYGAFAGYCRDIDFAHTIGVETRGAARLDRFSAIIVR CCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHCCCCHHHCCCCCCCCHHHHHHEEEEEE GERCPLASFVTSAPPPSKRDKSEDIMGENPAAN CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA