Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486027
Identifier: 103486027
GI number: 103486027
Start: 549935
End: 550342
Strand: Reverse
Name: 103486027
Synonym: Sala_0534
Alternate gene names: NA
Gene position: 550342-549935 (Counterclockwise)
Preceding gene: 103486028
Following gene: 103486026
Centisome position: 16.45
GC content: 64.71
Gene sequence:
>408_bases ATGTCTGACCTTCCCGCCGTTCAGCCCGCCCGCCTGTCCAACGATCCATATGAAACCAGCGGGGTTCAGGCGGGATTTCA GCTGCCGCGCTGGATGTGGCGCGCGATGTTCGCCTGTTATGCCATCTTCTTTGTCGGCATTGGCGCGGCGACCGGCCGCG ACACGGCGACGATTTTCGCGCTCGTCATCTCCTTGCTTTACATGCTGATGTATTTCGTGACCGCCGGGCTGCTCCATGCG CAAAAGGGCCCCGAACATGACTCGCCGCTCGATCGCGTCGGCGGGACGCTCGATACCTGGACCGGCCCGATGGACCGCGG CACCGTCGCCGCGCAGTTGCTCGCCGTGCCGGCGGGCTTTGCCTTCCTGGGCCTGACTTTCTTCGCCATCCGCGCCGCGA GCTTCTGA
Upstream 100 bases:
>100_bases GTCGGGGAGAAGGCGCGAATGATCGCCGAAAGCCTGCTCACCGGCATCCGCCTGCATCGCGACCGCGACGCCGATCTGTT CAGCAAAGTGGAGCTTCCCC
Downstream 100 bases:
>100_bases CGATGGACAAAACACTTATCGCCGATCGCAAACCGCCGCTGCCGCCGGGCGCTACCGCCTACCGTCAAATAGGCCCCTTT GCTGCGGCCGATATTCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MSDLPAVQPARLSNDPYETSGVQAGFQLPRWMWRAMFACYAIFFVGIGAATGRDTATIFALVISLLYMLMYFVTAGLLHA QKGPEHDSPLDRVGGTLDTWTGPMDRGTVAAQLLAVPAGFAFLGLTFFAIRAASF
Sequences:
>Translated_135_residues MSDLPAVQPARLSNDPYETSGVQAGFQLPRWMWRAMFACYAIFFVGIGAATGRDTATIFALVISLLYMLMYFVTAGLLHA QKGPEHDSPLDRVGGTLDTWTGPMDRGTVAAQLLAVPAGFAFLGLTFFAIRAASF >Mature_134_residues SDLPAVQPARLSNDPYETSGVQAGFQLPRWMWRAMFACYAIFFVGIGAATGRDTATIFALVISLLYMLMYFVTAGLLHAQ KGPEHDSPLDRVGGTLDTWTGPMDRGTVAAQLLAVPAGFAFLGLTFFAIRAASF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14583; Mature: 14452
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLPAVQPARLSNDPYETSGVQAGFQLPRWMWRAMFACYAIFFVGIGAATGRDTATIFA CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH LVISLLYMLMYFVTAGLLHAQKGPEHDSPLDRVGGTLDTWTGPMDRGTVAAQLLAVPAGF HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH AFLGLTFFAIRAASF HHHHHHHHHHHHCCC >Mature Secondary Structure SDLPAVQPARLSNDPYETSGVQAGFQLPRWMWRAMFACYAIFFVGIGAATGRDTATIFA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH LVISLLYMLMYFVTAGLLHAQKGPEHDSPLDRVGGTLDTWTGPMDRGTVAAQLLAVPAGF HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH AFLGLTFFAIRAASF HHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA