Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486025

Identifier: 103486025

GI number: 103486025

Start: 546739

End: 548091

Strand: Direct

Name: 103486025

Synonym: Sala_0532

Alternate gene names: NA

Gene position: 546739-548091 (Clockwise)

Preceding gene: 103486022

Following gene: 103486029

Centisome position: 16.34

GC content: 67.85

Gene sequence:

>1353_bases
ATGCGCCATTCGCTGACCGCCGCCCTGCTGGCGACCTCGATCCTCTGCCTGCCGTCGACGGCGCGCGCACAGACGATGAC
CGCCGAGGAAGCCGCCGCGCTCCGCGCGGAACTCGCGGCGCTGAAGGCACAGGTCGCGACGCTCGAATCGCGTCTCGACG
CGGCGACCGGGCAGCCCGCTCCCGCTGCCCAGCCCAAGTCGCCGTCGGTGGCCGCCAAACCCGCGAGCGAGATCGGCTGG
AAGGGCGCGCCCGAGATCAGAACCGCCGACGGCTGGAGCTTCAAGCCGCGCGGACGGATGCAGGTCGACCTCGCCGCGGT
CGATACACCCGTCGGGGCGACCGACGCGCGTGGCGGGCTGAAAACCGAGTTTCGCCGAATCTATCTGGGCGTCGACGGCA
AGATTCCCGGCGGTTTCGCCTATCGCGTCGAGGCCGATGTGGCGAACAATTCGGTGGAGCTTACCGACGTTTACCTGACC
TATGGCACCGGGCCCTTGTCGGTTACGGCCGGCCAGATCAAGCCCTTCTGGTCGCTCGACGAAATGACCAGCGACCTTTT
CACCAGCTTCATGGAGCGCGCGGCCTTTGCCCAGGCTTTTGGCTTCGAGCGGCGCGTCGGCCTGTCGGCGCAATATAGGA
GGGGCGACCTGCTGCTTCAGGCGGGGGTGTTCGGCGACAATGCGGGCGACCTGCTCGACGACAGCAACAATGCGGTCAGC
CTCGATGGGCGAGTGGTGTGGATGCCCAAGCTCGGCGACACGCAGCTGCACCTCGCCGCGTCGGGCCACTGGCGCGATCC
CAATGATCCCGCCGCGCTCGGGCGCTACCGTGCGCGTCCCTTCGCGCACACGACCGACGTGCGGCTGGTCGATACGGGGC
TGATCGACGTCGCGAGCGAACGCGGTATCGGGCTGGAGGGCGCGGTGATCGCCGGGCCGTTCCACGCGGCGGGCGAGGGC
TATTGGCACCGCGTCAATCGCACCGGACCGGCCGACCCGACCTTCTTCGGCGGCTATGCCGAGGTCGGGATGGTGCTGAC
GCCGGGCGACCGCCGCGGTTACAAGGATGGCGGTTTCGACCGGCTGAAACCCACGAAGCCGATCACTGCCGGCGGCGTCG
GCGCGTTCGAAGTGAACGCCCGCTACGATCATCTTGATCTGAACGACGGCGGGATCGTCGGCGGGCGCCAGCAGGCGGCG
CTGATCAGCCTCGTCTGGGCGCCGGTCGACTATATTCGCATCAACGCCAACTATGGGAAATTGTGGGTGGGCGATGCACG
TGTGGCAACGGCGACGGGGGACCGCGATTATACGGCGGACACCTTCGGCCTTCGGACGCAGGTGGATTTCTGA

Upstream 100 bases:

>100_bases
GATGCAACAAAAATGTCATGCAATTGACGCGCAACGGTCACTAATACGCCATAACAGCGCCGCCAGTTTGTAACCCTTTC
GTCACGGAGCTTTCCCTTCC

Downstream 100 bases:

>100_bases
TGCGGGTTGGCGGGGCTATTTCGCCTTCTTGATGCCTGCTGCCGTTTCGAGTTCGACCAGAGAGTCTTCCAGATAGTCGA
TCATCCGCTGCGCGTGCGGG

Product: phosphate-selective porin O and P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MRHSLTAALLATSILCLPSTARAQTMTAEEAAALRAELAALKAQVATLESRLDAATGQPAPAAQPKSPSVAAKPASEIGW
KGAPEIRTADGWSFKPRGRMQVDLAAVDTPVGATDARGGLKTEFRRIYLGVDGKIPGGFAYRVEADVANNSVELTDVYLT
YGTGPLSVTAGQIKPFWSLDEMTSDLFTSFMERAAFAQAFGFERRVGLSAQYRRGDLLLQAGVFGDNAGDLLDDSNNAVS
LDGRVVWMPKLGDTQLHLAASGHWRDPNDPAALGRYRARPFAHTTDVRLVDTGLIDVASERGIGLEGAVIAGPFHAAGEG
YWHRVNRTGPADPTFFGGYAEVGMVLTPGDRRGYKDGGFDRLKPTKPITAGGVGAFEVNARYDHLDLNDGGIVGGRQQAA
LISLVWAPVDYIRINANYGKLWVGDARVATATGDRDYTADTFGLRTQVDF

Sequences:

>Translated_450_residues
MRHSLTAALLATSILCLPSTARAQTMTAEEAAALRAELAALKAQVATLESRLDAATGQPAPAAQPKSPSVAAKPASEIGW
KGAPEIRTADGWSFKPRGRMQVDLAAVDTPVGATDARGGLKTEFRRIYLGVDGKIPGGFAYRVEADVANNSVELTDVYLT
YGTGPLSVTAGQIKPFWSLDEMTSDLFTSFMERAAFAQAFGFERRVGLSAQYRRGDLLLQAGVFGDNAGDLLDDSNNAVS
LDGRVVWMPKLGDTQLHLAASGHWRDPNDPAALGRYRARPFAHTTDVRLVDTGLIDVASERGIGLEGAVIAGPFHAAGEG
YWHRVNRTGPADPTFFGGYAEVGMVLTPGDRRGYKDGGFDRLKPTKPITAGGVGAFEVNARYDHLDLNDGGIVGGRQQAA
LISLVWAPVDYIRINANYGKLWVGDARVATATGDRDYTADTFGLRTQVDF
>Mature_450_residues
MRHSLTAALLATSILCLPSTARAQTMTAEEAAALRAELAALKAQVATLESRLDAATGQPAPAAQPKSPSVAAKPASEIGW
KGAPEIRTADGWSFKPRGRMQVDLAAVDTPVGATDARGGLKTEFRRIYLGVDGKIPGGFAYRVEADVANNSVELTDVYLT
YGTGPLSVTAGQIKPFWSLDEMTSDLFTSFMERAAFAQAFGFERRVGLSAQYRRGDLLLQAGVFGDNAGDLLDDSNNAVS
LDGRVVWMPKLGDTQLHLAASGHWRDPNDPAALGRYRARPFAHTTDVRLVDTGLIDVASERGIGLEGAVIAGPFHAAGEG
YWHRVNRTGPADPTFFGGYAEVGMVLTPGDRRGYKDGGFDRLKPTKPITAGGVGAFEVNARYDHLDLNDGGIVGGRQQAA
LISLVWAPVDYIRINANYGKLWVGDARVATATGDRDYTADTFGLRTQVDF

Specific function: Unknown

COG id: COG3746

COG function: function code P; Phosphate-selective porin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010870 [H]

Pfam domain/function: PF07396 Porin_O_P [H]

EC number: NA

Molecular weight: Translated: 48045; Mature: 48045

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHSLTAALLATSILCLPSTARAQTMTAEEAAALRAELAALKAQVATLESRLDAATGQPA
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PAAQPKSPSVAAKPASEIGWKGAPEIRTADGWSFKPRGRMQVDLAAVDTPVGATDARGGL
CCCCCCCCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
KTEFRRIYLGVDGKIPGGFAYRVEADVANNSVELTDVYLTYGTGPLSVTAGQIKPFWSLD
CCEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCCCEEEECCCCCCCCCHH
EMTSDLFTSFMERAAFAQAFGFERRVGLSAQYRRGDLLLQAGVFGDNAGDLLDDSNNAVS
HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCEEE
LDGRVVWMPKLGDTQLHLAASGHWRDPNDPAALGRYRARPFAHTTDVRLVDTGLIDVASE
ECCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCEEEECCC
RGIGLEGAVIAGPFHAAGEGYWHRVNRTGPADPTFFGGYAEVGMVLTPGDRRGYKDGGFD
CCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCEECCHHHCCEEECCCCCCCCCCCCCC
RLKPTKPITAGGVGAFEVNARYDHLDLNDGGIVGGRQQAALISLVWAPVDYIRINANYGK
CCCCCCCCCCCCCCEEEECCEECEEECCCCCEECCCCHHEEEEEEECCEEEEEEECCCCE
LWVGDARVATATGDRDYTADTFGLRTQVDF
EEECCCEEEEECCCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MRHSLTAALLATSILCLPSTARAQTMTAEEAAALRAELAALKAQVATLESRLDAATGQPA
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PAAQPKSPSVAAKPASEIGWKGAPEIRTADGWSFKPRGRMQVDLAAVDTPVGATDARGGL
CCCCCCCCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
KTEFRRIYLGVDGKIPGGFAYRVEADVANNSVELTDVYLTYGTGPLSVTAGQIKPFWSLD
CCEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCCCEEEECCCCCCCCCHH
EMTSDLFTSFMERAAFAQAFGFERRVGLSAQYRRGDLLLQAGVFGDNAGDLLDDSNNAVS
HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCEEE
LDGRVVWMPKLGDTQLHLAASGHWRDPNDPAALGRYRARPFAHTTDVRLVDTGLIDVASE
ECCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCEEEECCC
RGIGLEGAVIAGPFHAAGEGYWHRVNRTGPADPTFFGGYAEVGMVLTPGDRRGYKDGGFD
CCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCEECCHHHCCEEECCCCCCCCCCCCCC
RLKPTKPITAGGVGAFEVNARYDHLDLNDGGIVGGRQQAALISLVWAPVDYIRINANYGK
CCCCCCCCCCCCCCEEEECCEECEEECCCCCEECCCCHHEEEEEEECCEEEEEEECCCCE
LWVGDARVATATGDRDYTADTFGLRTQVDF
EEECCCEEEEECCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11259647; 1938923 [H]