Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486023
Identifier: 103486023
GI number: 103486023
Start: 544299
End: 545363
Strand: Reverse
Name: 103486023
Synonym: Sala_0530
Alternate gene names: NA
Gene position: 545363-544299 (Counterclockwise)
Preceding gene: 103486024
Following gene: 103486015
Centisome position: 16.3
GC content: 65.82
Gene sequence:
>1065_bases ATGTATAGTGAAAGCGACCTGCAAGCCGCGGTCGATGCGAAGATATTGACGCCGGAGGCCGCCGCGGCCTTTCGTGGCCA TATCGCATCGGTGCGCGCCGCCCCCGGAGCGGATGAAGAATCCTTCCGCCTCATCACCGGCTTCAACGATATTTTCGTGA GCATCGCGGCGGTAATCCTGCTCGTCGCGGTGGCGTGGATCGGCGAATCGATTCACTCCGCGCTCGCCGGCGCCTTCGTC GCCGGCTCGGCGTGGTTGCTGGCGGAGTATTTTACGCGCCGCCGGCGCATGGCGCTGCCCAGCATCATCCTCGTGCTCGC CTTTGCCGGCGGCGTCTTTGCGACGATGGCGGGTTTCCTCGTCGAACATGGCGAGGCGATTTTCGGCCGCAGCCCCGGCG ATACCGTCGGCGCGTTGCTGGTCGGTTCGATCGCCGCAGTCACTGCGGGCGCAACCTGGCTGCACTGGAAGCGCTTCATG GTGCCGATCACCGTCGCGGCGGGCACCGCCGCAATCGCGGCGACCGCGATCGCGCTGATCCTGTCGCTGACCGGCGTTCC CGATCATAACCCGACGCTGGTGATGGCGCTGGTCCTCGTCGCGGGGCTTGGGGTGTTCACGCTCGCCATGTGGTGGGACA AGAGCGACCGGGCGCGCCAGACGCGGCGCAGCGACGTCGCCTTCTGGCTGCATTTGCTCGCCGCACCGATGATCGCGCAT CCGATCTTTCACCTGCTCGGCGTGACCGAGGGCGACAATATCGGCAGCGGCGCCGCCGTCATGGTCGTCGCCATCTATGT GCTGTTCGGGCTGATCGCGCTTGCGATCGACCGCCGCGCGCTGCTCGTTTCGGCGCTCGCCTATGTGCTCTTCGCGCTGA CGCAGCTGTTCAACCAGTTCGGCGCGGTCGAACTCAACGTCGCGCTTACCGCCTTCGTGATCGGCTCGGCGCTTCTGCTG CTGTCGGCCTTCTGGCAGAATGCGCGGGCGGTGGTCGTGGGGATCCTGCCAACGACTATCGCCAATCAGTTGCCGGTCGC GGTCAGTCCGCAACCAGCTTCATAA
Upstream 100 bases:
>100_bases TCAAGGGGGAAGGATAAGCGCCATACCGTATTGACACAGCAACACAGTTCTGCGATAGTCGCCGCGGGGCAAGGGGATCG GTCTAAGAAGGACGACCCCG
Downstream 100 bases:
>100_bases GTTTGCGCTCGACGGGGGCGAGCACATTGGACAGCTCGTCCCCGCGCTTCAGGATCGCCCCGGCTTCGGAGACCAAGGCC CACATGCCCTGACGGTTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 354; Mature: 354
Protein sequence:
>354_residues MYSESDLQAAVDAKILTPEAAAAFRGHIASVRAAPGADEESFRLITGFNDIFVSIAAVILLVAVAWIGESIHSALAGAFV AGSAWLLAEYFTRRRRMALPSIILVLAFAGGVFATMAGFLVEHGEAIFGRSPGDTVGALLVGSIAAVTAGATWLHWKRFM VPITVAAGTAAIAATAIALILSLTGVPDHNPTLVMALVLVAGLGVFTLAMWWDKSDRARQTRRSDVAFWLHLLAAPMIAH PIFHLLGVTEGDNIGSGAAVMVVAIYVLFGLIALAIDRRALLVSALAYVLFALTQLFNQFGAVELNVALTAFVIGSALLL LSAFWQNARAVVVGILPTTIANQLPVAVSPQPAS
Sequences:
>Translated_354_residues MYSESDLQAAVDAKILTPEAAAAFRGHIASVRAAPGADEESFRLITGFNDIFVSIAAVILLVAVAWIGESIHSALAGAFV AGSAWLLAEYFTRRRRMALPSIILVLAFAGGVFATMAGFLVEHGEAIFGRSPGDTVGALLVGSIAAVTAGATWLHWKRFM VPITVAAGTAAIAATAIALILSLTGVPDHNPTLVMALVLVAGLGVFTLAMWWDKSDRARQTRRSDVAFWLHLLAAPMIAH PIFHLLGVTEGDNIGSGAAVMVVAIYVLFGLIALAIDRRALLVSALAYVLFALTQLFNQFGAVELNVALTAFVIGSALLL LSAFWQNARAVVVGILPTTIANQLPVAVSPQPAS >Mature_354_residues MYSESDLQAAVDAKILTPEAAAAFRGHIASVRAAPGADEESFRLITGFNDIFVSIAAVILLVAVAWIGESIHSALAGAFV AGSAWLLAEYFTRRRRMALPSIILVLAFAGGVFATMAGFLVEHGEAIFGRSPGDTVGALLVGSIAAVTAGATWLHWKRFM VPITVAAGTAAIAATAIALILSLTGVPDHNPTLVMALVLVAGLGVFTLAMWWDKSDRARQTRRSDVAFWLHLLAAPMIAH PIFHLLGVTEGDNIGSGAAVMVVAIYVLFGLIALAIDRRALLVSALAYVLFALTQLFNQFGAVELNVALTAFVIGSALLL LSAFWQNARAVVVGILPTTIANQLPVAVSPQPAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37105; Mature: 37105
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYSESDLQAAVDAKILTPEAAAAFRGHIASVRAAPGADEESFRLITGFNDIFVSIAAVIL CCCCHHHHHHHHHHEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHH LVAVAWIGESIHSALAGAFVAGSAWLLAEYFTRRRRMALPSIILVLAFAGGVFATMAGFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEHGEAIFGRSPGDTVGALLVGSIAAVTAGATWLHWKRFMVPITVAAGTAAIAATAIALI HHCCCHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEHHHHHHHHHHHHHHH LSLTGVPDHNPTLVMALVLVAGLGVFTLAMWWDKSDRARQTRRSDVAFWLHLLAAPMIAH HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH PIFHLLGVTEGDNIGSGAAVMVVAIYVLFGLIALAIDRRALLVSALAYVLFALTQLFNQF HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAVELNVALTAFVIGSALLLLSAFWQNARAVVVGILPTTIANQLPVAVSPQPAS CCEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MYSESDLQAAVDAKILTPEAAAAFRGHIASVRAAPGADEESFRLITGFNDIFVSIAAVIL CCCCHHHHHHHHHHEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHH LVAVAWIGESIHSALAGAFVAGSAWLLAEYFTRRRRMALPSIILVLAFAGGVFATMAGFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEHGEAIFGRSPGDTVGALLVGSIAAVTAGATWLHWKRFMVPITVAAGTAAIAATAIALI HHCCCHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEHHHHHHHHHHHHHHH LSLTGVPDHNPTLVMALVLVAGLGVFTLAMWWDKSDRARQTRRSDVAFWLHLLAAPMIAH HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH PIFHLLGVTEGDNIGSGAAVMVVAIYVLFGLIALAIDRRALLVSALAYVLFALTQLFNQF HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAVELNVALTAFVIGSALLLLSAFWQNARAVVVGILPTTIANQLPVAVSPQPAS CCEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA