Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486015
Identifier: 103486015
GI number: 103486015
Start: 537311
End: 537901
Strand: Reverse
Name: 103486015
Synonym: Sala_0522
Alternate gene names: NA
Gene position: 537901-537311 (Counterclockwise)
Preceding gene: 103486023
Following gene: 103486014
Centisome position: 16.08
GC content: 68.36
Gene sequence:
>591_bases ATGCCCGCCCGCGCGGCGCCCGACACGACAGAAGAGGACAAGATGATGGCAAAAGCCGCTACGCCCGCGACCAAGAAAGC CGCAGCGCCCCGTCCCAAGGCCCCCGCGAAGGCCGCAGCCGCCAAGGCGGCGCCCGCTCGCAAGCCCGCGTCGACAAAGG CCGCCAAGGAGCATCCGATCCGCGATCAGCTGGCGGTGACGCGCGACACGATCAAGTCCGAAGCGTCGAAGAAGGCGGCA TCGCTGAAGCAGGAAGCCGCTGCGCTCAAGAAACAGGCCACCGCCTCGGCGCGCGATGCCGCCACCAGGGGCAAGGACAA GGCCGCCGAAGCCGTGGGCAGCCTGGCCAGGCTGCTCGAAGACAGCGCCGGCACGGTCGATACCAAGTTCGGCAAGCAAT ATGGCGACTATGCGCGCTCGGCCGCCGCGACCGTCGCCGGCCTCGCCTCGACGCTCGACAAGAAGGATCTCGACGAACTC GCGGCATCGACACGCGACATGGTCAAGAAGAATCCCGCGATCGCGGTCGGCGCCGCGACGGTGATCGGCTTCGTCCTCGC CCGGATGCTCAAGGGCGGCTCGAACGACTGA
Upstream 100 bases:
>100_bases TTATCGGCGCCCGCGTGCGAGCGCAATACGCATAGGAATTTTGCGCGGCTATGGAACCAAAGGGCGCCGCTTGCTATATA TTGATACAGGACCAAAAAGG
Downstream 100 bases:
>100_bases CCGGACCTTGGCATCCCCCGATCCCGAAACCCCCGCGCCCGTCGGGCGCAGCTTTGACGGCATAAGCCATGGCTATGCGC CGGACGCCCGCCCGGCAACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MPARAAPDTTEEDKMMAKAATPATKKAAAPRPKAPAKAAAAKAAPARKPASTKAAKEHPIRDQLAVTRDTIKSEASKKAA SLKQEAAALKKQATASARDAATRGKDKAAEAVGSLARLLEDSAGTVDTKFGKQYGDYARSAAATVAGLASTLDKKDLDEL AASTRDMVKKNPAIAVGAATVIGFVLARMLKGGSND
Sequences:
>Translated_196_residues MPARAAPDTTEEDKMMAKAATPATKKAAAPRPKAPAKAAAAKAAPARKPASTKAAKEHPIRDQLAVTRDTIKSEASKKAA SLKQEAAALKKQATASARDAATRGKDKAAEAVGSLARLLEDSAGTVDTKFGKQYGDYARSAAATVAGLASTLDKKDLDEL AASTRDMVKKNPAIAVGAATVIGFVLARMLKGGSND >Mature_195_residues PARAAPDTTEEDKMMAKAATPATKKAAAPRPKAPAKAAAAKAAPARKPASTKAAKEHPIRDQLAVTRDTIKSEASKKAAS LKQEAAALKKQATASARDAATRGKDKAAEAVGSLARLLEDSAGTVDTKFGKQYGDYARSAAATVAGLASTLDKKDLDELA ASTRDMVKKNPAIAVGAATVIGFVLARMLKGGSND
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20055; Mature: 19924
Theoretical pI: Translated: 10.71; Mature: 10.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPARAAPDTTEEDKMMAKAATPATKKAAAPRPKAPAKAAAAKAAPARKPASTKAAKEHPI CCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCC RDQLAVTRDTIKSEASKKAASLKQEAAALKKQATASARDAATRGKDKAAEAVGSLARLLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH DSAGTVDTKFGKQYGDYARSAAATVAGLASTLDKKDLDELAASTRDMVKKNPAIAVGAAT HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH VIGFVLARMLKGGSND HHHHHHHHHHCCCCCC >Mature Secondary Structure PARAAPDTTEEDKMMAKAATPATKKAAAPRPKAPAKAAAAKAAPARKPASTKAAKEHPI CCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCC RDQLAVTRDTIKSEASKKAASLKQEAAALKKQATASARDAATRGKDKAAEAVGSLARLLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH DSAGTVDTKFGKQYGDYARSAAATVAGLASTLDKKDLDELAASTRDMVKKNPAIAVGAAT HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH VIGFVLARMLKGGSND HHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA