Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is nadA [H]
Identifier: 103485960
GI number: 103485960
Start: 480514
End: 481503
Strand: Direct
Name: nadA [H]
Synonym: Sala_0467
Alternate gene names: 103485960
Gene position: 480514-481503 (Clockwise)
Preceding gene: 103485959
Following gene: 103485962
Centisome position: 14.36
GC content: 62.12
Gene sequence:
>990_bases ATGACTGCCCCCATCCGCGACTCGCTCTCGGGCCTCGACCTGCGCGCCGAAATCGACCGCCTCCGCAAGGAGCGCAACGC CGTCATCCTCGCGCATTATTACCAGAAGCCCGAGATTCAGGATCTCGCCGATTTCGTGGGCGATTCGCTCGAACTGTCGC GCAAGGCGGCCGAAACCGACGCCGAAGTGATCGCCTTTTGCGGTGTCAAGTTCATGGCCGAAACCGCGAAGATACTGAGC CCCGAAAAGATCGTCATCCTGCCCGACATGGACGCGGGATGCAGCCTCGAGGACAGCTGCCCGCCCGAACAGTTCAAGCG TTTCCGCGAAAAGCATCCCGATCATATTGCGCTCACCTACATCAACTGCTCGGCGGCAGTGAAAGCCTTGAGCGACATCA TCGTCACCTCGTCGAGCGCCGAGACGATCATCAGCCAGATCCCACCCGAACAGAAGATCATTTTTGGCCCCGACCGCCAC CTTGGCGGCTATATGAACCGCAAGTTCGGGCGTGACATGCTGCTGTGGCCCGGCGTGTGCATCGTCCACGAGGCGTTCAG CGAGACCGAGCTTCTGAAGCTGAAGGCGCAGTATCCCGGCGCGCCGGTCGCGGCGCACCCCGAATGTCCGCCGCACATCG TCGAGCATGCCGATTATGTCGGGTCGACCAGCGGCATCCTGCAATTCGCGAAGAGTTTCAAGGGCGACACGCTGATCGTC GCGACCGAGCCGCACATCATTCACCAGATGGAGCTGGCGCTGCCCGAAAAGACTTTCATCGGCGCGCCGGGCGCCGACGG CAACTGCAACTGCAACATCTGCCCCTATATGGCGCTCAATACGATGGAGAAGCTCTACATCGCGCTGCGCGACCTTCAGC CGCGGATCGAGATGGACGAGGAGCTTCGCCTCGCGGCGCGCAAAAGCCTCGACCGGATGTTGGAGATGGCGTCGGGGACG GTCGGCAAGGGCGATCTGGGGCGGGCGTGA
Upstream 100 bases:
>100_bases TCGCACTTGCGGCGCGCCGCGTCGGCTGACGCGGCGAATTGCCCTGCCGTGGGGCAGGGTGTAGGGGGGCGCCACGGCCA GGCCATATAAGGATAACGCC
Downstream 100 bases:
>100_bases GTCGCGACTCGGTCGGGTGATTCGACCGATCCAAAGATCGAGTCGAAGCGCTTTGGCGGGAAACCCGAGTCCAAAAATGC TGCACCCTTGTTACAAAAAT
Product: quinolinate synthetase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MTAPIRDSLSGLDLRAEIDRLRKERNAVILAHYYQKPEIQDLADFVGDSLELSRKAAETDAEVIAFCGVKFMAETAKILS PEKIVILPDMDAGCSLEDSCPPEQFKRFREKHPDHIALTYINCSAAVKALSDIIVTSSSAETIISQIPPEQKIIFGPDRH LGGYMNRKFGRDMLLWPGVCIVHEAFSETELLKLKAQYPGAPVAAHPECPPHIVEHADYVGSTSGILQFAKSFKGDTLIV ATEPHIIHQMELALPEKTFIGAPGADGNCNCNICPYMALNTMEKLYIALRDLQPRIEMDEELRLAARKSLDRMLEMASGT VGKGDLGRA
Sequences:
>Translated_329_residues MTAPIRDSLSGLDLRAEIDRLRKERNAVILAHYYQKPEIQDLADFVGDSLELSRKAAETDAEVIAFCGVKFMAETAKILS PEKIVILPDMDAGCSLEDSCPPEQFKRFREKHPDHIALTYINCSAAVKALSDIIVTSSSAETIISQIPPEQKIIFGPDRH LGGYMNRKFGRDMLLWPGVCIVHEAFSETELLKLKAQYPGAPVAAHPECPPHIVEHADYVGSTSGILQFAKSFKGDTLIV ATEPHIIHQMELALPEKTFIGAPGADGNCNCNICPYMALNTMEKLYIALRDLQPRIEMDEELRLAARKSLDRMLEMASGT VGKGDLGRA >Mature_328_residues TAPIRDSLSGLDLRAEIDRLRKERNAVILAHYYQKPEIQDLADFVGDSLELSRKAAETDAEVIAFCGVKFMAETAKILSP EKIVILPDMDAGCSLEDSCPPEQFKRFREKHPDHIALTYINCSAAVKALSDIIVTSSSAETIISQIPPEQKIIFGPDRHL GGYMNRKFGRDMLLWPGVCIVHEAFSETELLKLKAQYPGAPVAAHPECPPHIVEHADYVGSTSGILQFAKSFKGDTLIVA TEPHIIHQMELALPEKTFIGAPGADGNCNCNICPYMALNTMEKLYIALRDLQPRIEMDEELRLAARKSLDRMLEMASGTV GKGDLGRA
Specific function: Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate [H]
COG id: COG0379
COG function: function code H; Quinolinate synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the quinolinate synthase A family. Type 2 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786964, Length=318, Percent_Identity=44.6540880503145, Blast_Score=260, Evalue=1e-70,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003473 - InterPro: IPR023066 [H]
Pfam domain/function: PF02445 NadA [H]
EC number: =2.5.1.72 [H]
Molecular weight: Translated: 36318; Mature: 36187
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPIRDSLSGLDLRAEIDRLRKERNAVILAHYYQKPEIQDLADFVGDSLELSRKAAETD CCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHCH AEVIAFCGVKFMAETAKILSPEKIVILPDMDAGCSLEDSCPPEQFKRFREKHPDHIALTY HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE INCSAAVKALSDIIVTSSSAETIISQIPPEQKIIFGPDRHLGGYMNRKFGRDMLLWPGVC EEHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEECCCHHHCCHHHHHHCCCEEECCCHH IVHEAFSETELLKLKAQYPGAPVAAHPECPPHIVEHADYVGSTSGILQFAKSFKGDTLIV HHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCEEEE ATEPHIIHQMELALPEKTFIGAPGADGNCNCNICPYMALNTMEKLYIALRDLQPRIEMDE ECCCHHHHHHHHHCCCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH ELRLAARKSLDRMLEMASGTVGKGDLGRA HHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure TAPIRDSLSGLDLRAEIDRLRKERNAVILAHYYQKPEIQDLADFVGDSLELSRKAAETD CCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHCH AEVIAFCGVKFMAETAKILSPEKIVILPDMDAGCSLEDSCPPEQFKRFREKHPDHIALTY HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE INCSAAVKALSDIIVTSSSAETIISQIPPEQKIIFGPDRHLGGYMNRKFGRDMLLWPGVC EEHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEECCCHHHCCHHHHHHCCCEEECCCHH IVHEAFSETELLKLKAQYPGAPVAAHPECPPHIVEHADYVGSTSGILQFAKSFKGDTLIV HHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCEEEE ATEPHIIHQMELALPEKTFIGAPGADGNCNCNICPYMALNTMEKLYIALRDLQPRIEMDE ECCCHHHHHHHHHCCCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH ELRLAARKSLDRMLEMASGTVGKGDLGRA HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12240834 [H]