Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 103485931

GI number: 103485931

Start: 446826

End: 448373

Strand: Direct

Name: xerD [C]

Synonym: Sala_0438

Alternate gene names: 103485931

Gene position: 446826-448373 (Clockwise)

Preceding gene: 103485927

Following gene: 103485932

Centisome position: 13.36

GC content: 62.6

Gene sequence:

>1548_bases
ATGCGATCAAGATCATTATTGTCGTTTCGAGCGGCCCGGCTCCGGGTCGAAGACCCGCCCAGTCACGACGCTCTACTCAC
CGCATTCCTCTCCTCTCTGTCGCTCGACGAGAGGTCAGGCAGTGCGATTCTGTTTGGCGCTGCGGCCCGTCATTTCCTGC
ATTGGATGGAACTGCATGGGATCGCGATCCGCACGATCGACGATCGGACCGTTCGGCGGTTCGAGAAGCATCGGTGCCGT
TGCCACCGGTATTCGGCGCAGCAGCCAGTCTATAAGGCGGACATTGCAGCGCGAGTCAGGCGCTTCGTCCGCTTCCTGGA
GGATCAAGGCTACGTCGGTGTCGACGACGGGATCGACGATCTGCCACGGCACCTCGCCGACTATTTCGATGGGATCGATC
GCTTGCAACTCGCGCAAGGACCGGCCCAGTCCTATCGATCCGAGGCCGAGCATTTCGCGGCCTGGCTTCGCATTGCGCGA
CGACAATGGGCCGATATCGATGACACGATCATCGACCAGTACGGCGCGCATGATTGTCGATGTCCGGTCTGGCGCAAGCG
AGGCAAGCTTGTTGCCTCGGGCGCGAAGCGGCGGCGGCGAGGCGCTCGGCACTTCGTCGAGTTCTTGCGCGACCGCGGTG
TCATCCCTTCAGTCGAACTGGTGTCGGATGACGACCCGCACATGGCGGCATATCTGGCATGGCTCAAGCAACACCGCGGC
GCGACCGATGAGACGATCCGGCGCTACCGGGCCGATATCAGGCGGCTCGCGCCTATGCTCGGCGAGCCTTCACAATGGGA
TGCAGCCGTCCTCAGACGGGCGTTTCAACAACGAAGCAAGGAGACGCCGGGTTCGGCATCACTGCTCGTCACGATAATAC
GGAGCTATATTCGGTTCCTGGTCGTGCAGGGTATTTGCCGTCCAGCTTTGTTGCACGCGATCCCATCAGTGCAACGCTAC
CGTCTTTCGACGCTGCCCCGGCACGTTAACCCGGCAACGATCGAGCAGATCATCGGCGCATGTCCGACTGATCGCCCGGT
GGAAGTTCGGGACAAGGCCATCATTCTCCTGCTCGCCCGGCTTGGCCTGCGTGCCGGTGATATTCGGGATATGCACCTCG
ACGATATCGACTGGCGCTCGGGCCACCTGACGGTCAAGGGCAAGACGCGTCGGCCTGATCGCCTGCCATTGCCTCAGGAC
GTCGGTGACGCGATCCTGGACTACATTGCCACGGCGCGTCCCAAGACCGCCGATCCGCATCTGTTCGTGCGCGCGCAAGC
CCCGTTCCGTTCGTTCCGCTCATCGGCGGAGATCGCCGGCATCGTTGCACGCACGCATGAGCGCGGCGGGATCGAAGGCG
TGCCGACCGGATCGCACATTTTCCGGCATTCGCTTGCCACCAACTTGCTGCGCGCGGGCGCAGGGCTGGAGTCCGTTGGA
ACGATCCTGCGCCACAGCTCGCCCGAGACCACCGCCATCTACGCCAAGGTCGACCTGCCGATGCTCATGAAAATCGCGCA
GCCATGGCCGGGAGAACCGTCATGCTGA

Upstream 100 bases:

>100_bases
TCGAGCGTGGCGGCGAGAGACGCAGGTTTCCTTCGGTTTTCCATGATTTCACTCCAGATAATTACGGTTCCCTCGACCTG
AACAAGTCGAAGGAACCAAC

Downstream 100 bases:

>100_bases
GCACGCAGATTGCCAGATACGTCTCGCTGTATCGCAGCTTGGGGCGGAAGTTCTCGGAACAGGAACGACTGCTGCGCCAA
TACGCCGCTTTCGCTGAACG

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 515

Protein sequence:

>515_residues
MRSRSLLSFRAARLRVEDPPSHDALLTAFLSSLSLDERSGSAILFGAAARHFLHWMELHGIAIRTIDDRTVRRFEKHRCR
CHRYSAQQPVYKADIAARVRRFVRFLEDQGYVGVDDGIDDLPRHLADYFDGIDRLQLAQGPAQSYRSEAEHFAAWLRIAR
RQWADIDDTIIDQYGAHDCRCPVWRKRGKLVASGAKRRRRGARHFVEFLRDRGVIPSVELVSDDDPHMAAYLAWLKQHRG
ATDETIRRYRADIRRLAPMLGEPSQWDAAVLRRAFQQRSKETPGSASLLVTIIRSYIRFLVVQGICRPALLHAIPSVQRY
RLSTLPRHVNPATIEQIIGACPTDRPVEVRDKAIILLLARLGLRAGDIRDMHLDDIDWRSGHLTVKGKTRRPDRLPLPQD
VGDAILDYIATARPKTADPHLFVRAQAPFRSFRSSAEIAGIVARTHERGGIEGVPTGSHIFRHSLATNLLRAGAGLESVG
TILRHSSPETTAIYAKVDLPMLMKIAQPWPGEPSC

Sequences:

>Translated_515_residues
MRSRSLLSFRAARLRVEDPPSHDALLTAFLSSLSLDERSGSAILFGAAARHFLHWMELHGIAIRTIDDRTVRRFEKHRCR
CHRYSAQQPVYKADIAARVRRFVRFLEDQGYVGVDDGIDDLPRHLADYFDGIDRLQLAQGPAQSYRSEAEHFAAWLRIAR
RQWADIDDTIIDQYGAHDCRCPVWRKRGKLVASGAKRRRRGARHFVEFLRDRGVIPSVELVSDDDPHMAAYLAWLKQHRG
ATDETIRRYRADIRRLAPMLGEPSQWDAAVLRRAFQQRSKETPGSASLLVTIIRSYIRFLVVQGICRPALLHAIPSVQRY
RLSTLPRHVNPATIEQIIGACPTDRPVEVRDKAIILLLARLGLRAGDIRDMHLDDIDWRSGHLTVKGKTRRPDRLPLPQD
VGDAILDYIATARPKTADPHLFVRAQAPFRSFRSSAEIAGIVARTHERGGIEGVPTGSHIFRHSLATNLLRAGAGLESVG
TILRHSSPETTAIYAKVDLPMLMKIAQPWPGEPSC
>Mature_515_residues
MRSRSLLSFRAARLRVEDPPSHDALLTAFLSSLSLDERSGSAILFGAAARHFLHWMELHGIAIRTIDDRTVRRFEKHRCR
CHRYSAQQPVYKADIAARVRRFVRFLEDQGYVGVDDGIDDLPRHLADYFDGIDRLQLAQGPAQSYRSEAEHFAAWLRIAR
RQWADIDDTIIDQYGAHDCRCPVWRKRGKLVASGAKRRRRGARHFVEFLRDRGVIPSVELVSDDDPHMAAYLAWLKQHRG
ATDETIRRYRADIRRLAPMLGEPSQWDAAVLRRAFQQRSKETPGSASLLVTIIRSYIRFLVVQGICRPALLHAIPSVQRY
RLSTLPRHVNPATIEQIIGACPTDRPVEVRDKAIILLLARLGLRAGDIRDMHLDDIDWRSGHLTVKGKTRRPDRLPLPQD
VGDAILDYIATARPKTADPHLFVRAQAPFRSFRSSAEIAGIVARTHERGGIEGVPTGSHIFRHSLATNLLRAGAGLESVG
TILRHSSPETTAIYAKVDLPMLMKIAQPWPGEPSC

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=190, Percent_Identity=31.0526315789474, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 58223; Mature: 58223

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSRSLLSFRAARLRVEDPPSHDALLTAFLSSLSLDERSGSAILFGAAARHFLHWMELHG
CCCCHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHCC
IAIRTIDDRTVRRFEKHRCRCHRYSAQQPVYKADIAARVRRFVRFLEDQGYVGVDDGIDD
EEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LPRHLADYFDGIDRLQLAQGPAQSYRSEAEHFAAWLRIARRQWADIDDTIIDQYGAHDCR
HHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
CPVWRKRGKLVASGAKRRRRGARHFVEFLRDRGVIPSVELVSDDDPHMAAYLAWLKQHRG
CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCC
ATDETIRRYRADIRRLAPMLGEPSQWDAAVLRRAFQQRSKETPGSASLLVTIIRSYIRFL
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
VVQGICRPALLHAIPSVQRYRLSTLPRHVNPATIEQIIGACPTDRPVEVRDKAIILLLAR
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
LGLRAGDIRDMHLDDIDWRSGHLTVKGKTRRPDRLPLPQDVGDAILDYIATARPKTADPH
HCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
LFVRAQAPFRSFRSSAEIAGIVARTHERGGIEGVPTGSHIFRHSLATNLLRAGAGLESVG
EEEEECCHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
TILRHSSPETTAIYAKVDLPMLMKIAQPWPGEPSC
HHHHCCCCCCEEEEEECCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRSRSLLSFRAARLRVEDPPSHDALLTAFLSSLSLDERSGSAILFGAAARHFLHWMELHG
CCCCHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHCC
IAIRTIDDRTVRRFEKHRCRCHRYSAQQPVYKADIAARVRRFVRFLEDQGYVGVDDGIDD
EEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LPRHLADYFDGIDRLQLAQGPAQSYRSEAEHFAAWLRIARRQWADIDDTIIDQYGAHDCR
HHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
CPVWRKRGKLVASGAKRRRRGARHFVEFLRDRGVIPSVELVSDDDPHMAAYLAWLKQHRG
CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCC
ATDETIRRYRADIRRLAPMLGEPSQWDAAVLRRAFQQRSKETPGSASLLVTIIRSYIRFL
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
VVQGICRPALLHAIPSVQRYRLSTLPRHVNPATIEQIIGACPTDRPVEVRDKAIILLLAR
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
LGLRAGDIRDMHLDDIDWRSGHLTVKGKTRRPDRLPLPQDVGDAILDYIATARPKTADPH
HCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
LFVRAQAPFRSFRSSAEIAGIVARTHERGGIEGVPTGSHIFRHSLATNLLRAGAGLESVG
EEEEECCHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
TILRHSSPETTAIYAKVDLPMLMKIAQPWPGEPSC
HHHHCCCCCCEEEEEECCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]