Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103485924

Identifier: 103485924

GI number: 103485924

Start: 438445

End: 440391

Strand: Direct

Name: 103485924

Synonym: Sala_0431

Alternate gene names: NA

Gene position: 438445-440391 (Clockwise)

Preceding gene: 103485923

Following gene: 103485927

Centisome position: 13.11

GC content: 63.43

Gene sequence:

>1947_bases
ATGCATATCTGTGGTGATCGCGCACGCGAGCGTCGCGGCGTGACGGTCATCGACGCGATATCCAGATGCCTCGCGCAAGG
AGAGGTCGTGACGCTGGAGCGAATTGGCGGCGCCAATCGCCTCGCATTGGAGCGGGATGCACTGTTGCAGGCCCCCTTCC
TCGACGTGCTAGTGACGATGACGGTTACGGCGCCCGAGACCGACCAGGCCATACTCGATTCCTTGTTGACCGATGGCTTC
GCAGCAGCGCCCTCGCCCACGGTCCTACGCGACGCGGCCCATCTGCTGATCGAGGCCCCGCATCTGCGGGACCGTCTCGG
ACGGACGCTGACACCGATCCTACTTGATAAGGTCGCCGATCGATCCGATCCCCGGACCGACTTGATGGCGGCCTATGCCC
TCGAAGCGCTTTTCCGCCTCGCGCTAGCCGACGCCATGAATCGCCACCGGCTGCTCGCGCTTCTCACGGAAATTGACGGG
ACGCCGAGCGAACTGTTCGCAGCTCATGCGGCAAAGCTCCTCGGCGCAGCCTTCACGCAATGGGGCGGTAGCGATCTCAT
CGCGGCGCTCGAACGCCTGCTCCCTTCAGCTGAGGCCGAAGCCGCGTTCGAGCTCGGCCTGATCACGCTGGGCGATGGCC
TCGCGCAGGCGTCCATGCCCGACATTCTCGGTCGCCTCGAAGCGGCACAGTTGCGGTTCAGGCAAGCCGCCCGGGCCGAC
GAGGACCGCGCCGATGCAGTCGCCTATGACGCGATCATCGACATTATCCGCGGCTTTTGGAACGAGGCAGGCGCAGCCGA
TCTGCATGCATCGCTCTCGCGACTGGAGCGAGCCATCACCGACCGACAGGCTCTGCTGCGGGCAGCATCCCTGCCTCCTT
GGCTCGCGCCGCGGGCGGATCGCGAGATCGCCTGGGTCGGACTGGCTCGGGGCGCGCGGCGGGCGGTCGACGATCTCTCG
CGTCCCAGCTGGCTGAACGCCGCCGCGACGCTAAACGCGTTGCTGGCGATCTATGACGCGGAGCGAACCGTGAAGGCAGG
CCCTGGCCTGTCGCTGCTTATTCGACCGCGTATCGAGGCGGCATTTGTCCGCGAGCGCGGGCTAGCGGAACATCTCGACC
GGTTGCTGCGTGAACCCGACCTCTTTGGGATAGATGCTTGCCTTGCGACACAACTTCGGACTGGTGTGCAGCGACGCAGC
GAGGAGACAGAAGCTTCGCGAAAAGCTGAGGAGAACGCTTCGTATCCGCTGCTGACGAGCGTTCTCCATGGTCTCCCGGG
GGCAGACCAACTGCCCCAGATCACCGCTGCTGCGCTCGAATCTGCTCTCGGTCGACAGGCAAATCAGGCGGAGCAGTTCA
CCAATCCTGTCATCAATCAGCTCTTCCGCGAGCTCACCGAAGCGGTCGCGTCGTGCACAGACTACCACGGGGAGACGAAG
GATGGATTTGACGCCTTGCTGGCGCAGATCCTTATGTTCTGTGCAGACCGCCAAGATGCCGGCCGCAAGCAACTAGGCCC
ACGAACCGATTATCTGCGAGCGGATGACGCGAAGGAGGGCGACCTTCAGTCTGACTTGAGGGAGTTCATCAAGGGCAACA
TCACCACTGCGGAGGTACTGACCGAAGTGGAGGGCATCGCGACCGGCCGCAGCGATATCTATGTCGGGTTCGGAGGTGTG
CGGTTCATCTCAGAGCTCAAGCGCCATTTTGGCGCTGTCGATCGTGAAGTGGCCAGGTCCTATTTCGGGCAGGCTGGCGC
CTATCAGGCGACCAATGTGCGTCTCGGCTTCCTTGGCATCCTCGAACTCGTGGGCCGTCCGGGCCCACCCCCGACGATCG
CCGAATGCCTCTGGCATACGGACTATATTCCGGAAGGATCCACGCTGGCGCGGCACATCATCGTGTTCCGAGTACCCGGC
ATGCTTAAGACGCCATCATCCCTGTGA

Upstream 100 bases:

>100_bases
GCGAAGGAGACGCCGGGCCTCCAGATCCTCGTAGCGAGCGCCAATCCGCCGGCGATCGTCAGTCAGCTCGGCGAGGACCG
GTGCCGGATTGCGGAGAAGG

Downstream 100 bases:

>100_bases
CGGTACCGCGAGCGTCGCGTTCCAAAGCTATCTAACTATGATCGGACCGATAGAATGGCCGCACTCCCAGCCATTCCCAC
GCCCGCTGCGACGGGGATGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 648; Mature: 648

Protein sequence:

>648_residues
MHICGDRARERRGVTVIDAISRCLAQGEVVTLERIGGANRLALERDALLQAPFLDVLVTMTVTAPETDQAILDSLLTDGF
AAAPSPTVLRDAAHLLIEAPHLRDRLGRTLTPILLDKVADRSDPRTDLMAAYALEALFRLALADAMNRHRLLALLTEIDG
TPSELFAAHAAKLLGAAFTQWGGSDLIAALERLLPSAEAEAAFELGLITLGDGLAQASMPDILGRLEAAQLRFRQAARAD
EDRADAVAYDAIIDIIRGFWNEAGAADLHASLSRLERAITDRQALLRAASLPPWLAPRADREIAWVGLARGARRAVDDLS
RPSWLNAAATLNALLAIYDAERTVKAGPGLSLLIRPRIEAAFVRERGLAEHLDRLLREPDLFGIDACLATQLRTGVQRRS
EETEASRKAEENASYPLLTSVLHGLPGADQLPQITAAALESALGRQANQAEQFTNPVINQLFRELTEAVASCTDYHGETK
DGFDALLAQILMFCADRQDAGRKQLGPRTDYLRADDAKEGDLQSDLREFIKGNITTAEVLTEVEGIATGRSDIYVGFGGV
RFISELKRHFGAVDREVARSYFGQAGAYQATNVRLGFLGILELVGRPGPPPTIAECLWHTDYIPEGSTLARHIIVFRVPG
MLKTPSSL

Sequences:

>Translated_648_residues
MHICGDRARERRGVTVIDAISRCLAQGEVVTLERIGGANRLALERDALLQAPFLDVLVTMTVTAPETDQAILDSLLTDGF
AAAPSPTVLRDAAHLLIEAPHLRDRLGRTLTPILLDKVADRSDPRTDLMAAYALEALFRLALADAMNRHRLLALLTEIDG
TPSELFAAHAAKLLGAAFTQWGGSDLIAALERLLPSAEAEAAFELGLITLGDGLAQASMPDILGRLEAAQLRFRQAARAD
EDRADAVAYDAIIDIIRGFWNEAGAADLHASLSRLERAITDRQALLRAASLPPWLAPRADREIAWVGLARGARRAVDDLS
RPSWLNAAATLNALLAIYDAERTVKAGPGLSLLIRPRIEAAFVRERGLAEHLDRLLREPDLFGIDACLATQLRTGVQRRS
EETEASRKAEENASYPLLTSVLHGLPGADQLPQITAAALESALGRQANQAEQFTNPVINQLFRELTEAVASCTDYHGETK
DGFDALLAQILMFCADRQDAGRKQLGPRTDYLRADDAKEGDLQSDLREFIKGNITTAEVLTEVEGIATGRSDIYVGFGGV
RFISELKRHFGAVDREVARSYFGQAGAYQATNVRLGFLGILELVGRPGPPPTIAECLWHTDYIPEGSTLARHIIVFRVPG
MLKTPSSL
>Mature_648_residues
MHICGDRARERRGVTVIDAISRCLAQGEVVTLERIGGANRLALERDALLQAPFLDVLVTMTVTAPETDQAILDSLLTDGF
AAAPSPTVLRDAAHLLIEAPHLRDRLGRTLTPILLDKVADRSDPRTDLMAAYALEALFRLALADAMNRHRLLALLTEIDG
TPSELFAAHAAKLLGAAFTQWGGSDLIAALERLLPSAEAEAAFELGLITLGDGLAQASMPDILGRLEAAQLRFRQAARAD
EDRADAVAYDAIIDIIRGFWNEAGAADLHASLSRLERAITDRQALLRAASLPPWLAPRADREIAWVGLARGARRAVDDLS
RPSWLNAAATLNALLAIYDAERTVKAGPGLSLLIRPRIEAAFVRERGLAEHLDRLLREPDLFGIDACLATQLRTGVQRRS
EETEASRKAEENASYPLLTSVLHGLPGADQLPQITAAALESALGRQANQAEQFTNPVINQLFRELTEAVASCTDYHGETK
DGFDALLAQILMFCADRQDAGRKQLGPRTDYLRADDAKEGDLQSDLREFIKGNITTAEVLTEVEGIATGRSDIYVGFGGV
RFISELKRHFGAVDREVARSYFGQAGAYQATNVRLGFLGILELVGRPGPPPTIAECLWHTDYIPEGSTLARHIIVFRVPG
MLKTPSSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 70389; Mature: 70389

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHICGDRARERRGVTVIDAISRCLAQGEVVTLERIGGANRLALERDALLQAPFLDVLVTM
CCCCCCHHHHHCCCHHHHHHHHHHHCCCEEEHHHCCCCCHHHHHHHHHHHCHHHHHHHHH
TVTAPETDQAILDSLLTDGFAAAPSPTVLRDAAHLLIEAPHLRDRLGRTLTPILLDKVAD
HCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHC
RSDPRTDLMAAYALEALFRLALADAMNRHRLLALLTEIDGTPSELFAAHAAKLLGAAFTQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
WGGSDLIAALERLLPSAEAEAAFELGLITLGDGLAQASMPDILGRLEAAQLRFRQAARAD
CCCHHHHHHHHHHCCCCHHHHHHHHCEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHCCC
EDRADAVAYDAIIDIIRGFWNEAGAADLHASLSRLERAITDRQALLRAASLPPWLAPRAD
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
REIAWVGLARGARRAVDDLSRPSWLNAAATLNALLAIYDAERTVKAGPGLSLLIRPRIEA
CCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEECCHHH
AFVRERGLAEHLDRLLREPDLFGIDACLATQLRTGVQRRSEETEASRKAEENASYPLLTS
HHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VLHGLPGADQLPQITAAALESALGRQANQAEQFTNPVINQLFRELTEAVASCTDYHGETK
HHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGFDALLAQILMFCADRQDAGRKQLGPRTDYLRADDAKEGDLQSDLREFIKGNITTAEVL
CCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHH
TEVEGIATGRSDIYVGFGGVRFISELKRHFGAVDREVARSYFGQAGAYQATNVRLGFLGI
HHHHHHHCCCCCEEECCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCEECCEEHHHHHH
LELVGRPGPPPTIAECLWHTDYIPEGSTLARHIIVFRVPGMLKTPSSL
HHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHEECCCCCCCCCCC
>Mature Secondary Structure
MHICGDRARERRGVTVIDAISRCLAQGEVVTLERIGGANRLALERDALLQAPFLDVLVTM
CCCCCCHHHHHCCCHHHHHHHHHHHCCCEEEHHHCCCCCHHHHHHHHHHHCHHHHHHHHH
TVTAPETDQAILDSLLTDGFAAAPSPTVLRDAAHLLIEAPHLRDRLGRTLTPILLDKVAD
HCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHC
RSDPRTDLMAAYALEALFRLALADAMNRHRLLALLTEIDGTPSELFAAHAAKLLGAAFTQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
WGGSDLIAALERLLPSAEAEAAFELGLITLGDGLAQASMPDILGRLEAAQLRFRQAARAD
CCCHHHHHHHHHHCCCCHHHHHHHHCEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHCCC
EDRADAVAYDAIIDIIRGFWNEAGAADLHASLSRLERAITDRQALLRAASLPPWLAPRAD
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
REIAWVGLARGARRAVDDLSRPSWLNAAATLNALLAIYDAERTVKAGPGLSLLIRPRIEA
CCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEECCHHH
AFVRERGLAEHLDRLLREPDLFGIDACLATQLRTGVQRRSEETEASRKAEENASYPLLTS
HHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VLHGLPGADQLPQITAAALESALGRQANQAEQFTNPVINQLFRELTEAVASCTDYHGETK
HHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGFDALLAQILMFCADRQDAGRKQLGPRTDYLRADDAKEGDLQSDLREFIKGNITTAEVL
CCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHH
TEVEGIATGRSDIYVGFGGVRFISELKRHFGAVDREVARSYFGQAGAYQATNVRLGFLGI
HHHHHHHCCCCCEEECCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCEECCEEHHHHHH
LELVGRPGPPPTIAECLWHTDYIPEGSTLARHIIVFRVPGMLKTPSSL
HHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA