Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485922
Identifier: 103485922
GI number: 103485922
Start: 435883
End: 436536
Strand: Direct
Name: 103485922
Synonym: Sala_0429
Alternate gene names: NA
Gene position: 435883-436536 (Clockwise)
Preceding gene: 103485914
Following gene: 103485923
Centisome position: 13.03
GC content: 61.47
Gene sequence:
>654_bases GTGGTGTCTGAAGTATCTGGGGCGTCGGACCGGCAGAGTGCGGTAAGGTTGCTCGCATGTATTGATGCTGCGGGGGCTAC GGCAGACGCAGACCAGTGGGGCGAGGATGTCGTTGCTACGCTGCACGCGCAGTCGCGGCTGCAAGCGCTCGACTTCTGGA TGCGCAATCCGGACTATCTTGCAAATGAGCTTCTTACCGTCTTCGAGGAAACGGGCGACGCATCGCTCATCCATTTGGCC GAACGAATATTCGATGATCGCGAGCCCGATCTCCGGCGTCTGCCGATGATCCGCTATCATTTCGGGGCCTTCGAGCCGCT CGACAATGCGCTGTCGATCCTGGTCGCGGCAGGTCTTTTGAAGATCAGGCGGCAAGGGTCGCCAGGCCAGGTCCGCGAGC ATATCTATCTGCTGACGATCAAGGGGCGCGAGGCAATGGCGTCGCTGGCCGAGGCCGCGCCGGAACTGGCCTGGTATCGC GACCGAGCGGCGATCGTCACGCGCGTTGCCGGCGACAAGGGCGGCAAGGCTCTCAAGGATCGGCAATATCTCCAGGCTGA ATATGCCGGGACGGAACTCAACCATATCATCGCGCCGATCACCGAGCGCGTGCGCAAAAGGCTGGACGCCATATTGGAAA GGGCCGGACGATGA
Upstream 100 bases:
>100_bases TCACATTTGAACGATTTGGGGTTTTCAATTGCATTCATGGGTTACATCATCTTCATCATGGTGACGGGCTGTCCGGGGTA GACAAGAACAGGGGCCTCTT
Downstream 100 bases:
>100_bases CGGCAAGCTGGCTCGAAATGGTGGCGGAAAAGGCGGGCATGAGCCCGGCCGAAGCCGAGATAGCGCTTCGCAGACGGGGC ATTACGGCGGACCGTCCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 217; Mature: 217
Protein sequence:
>217_residues MVSEVSGASDRQSAVRLLACIDAAGATADADQWGEDVVATLHAQSRLQALDFWMRNPDYLANELLTVFEETGDASLIHLA ERIFDDREPDLRRLPMIRYHFGAFEPLDNALSILVAAGLLKIRRQGSPGQVREHIYLLTIKGREAMASLAEAAPELAWYR DRAAIVTRVAGDKGGKALKDRQYLQAEYAGTELNHIIAPITERVRKRLDAILERAGR
Sequences:
>Translated_217_residues MVSEVSGASDRQSAVRLLACIDAAGATADADQWGEDVVATLHAQSRLQALDFWMRNPDYLANELLTVFEETGDASLIHLA ERIFDDREPDLRRLPMIRYHFGAFEPLDNALSILVAAGLLKIRRQGSPGQVREHIYLLTIKGREAMASLAEAAPELAWYR DRAAIVTRVAGDKGGKALKDRQYLQAEYAGTELNHIIAPITERVRKRLDAILERAGR >Mature_217_residues MVSEVSGASDRQSAVRLLACIDAAGATADADQWGEDVVATLHAQSRLQALDFWMRNPDYLANELLTVFEETGDASLIHLA ERIFDDREPDLRRLPMIRYHFGAFEPLDNALSILVAAGLLKIRRQGSPGQVREHIYLLTIKGREAMASLAEAAPELAWYR DRAAIVTRVAGDKGGKALKDRQYLQAEYAGTELNHIIAPITERVRKRLDAILERAGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24120; Mature: 24120
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSEVSGASDRQSAVRLLACIDAAGATADADQWGEDVVATLHAQSRLQALDFWMRNPDYL CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH ANELLTVFEETGDASLIHLAERIFDDREPDLRRLPMIRYHFGAFEPLDNALSILVAAGLL HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHCCCCCHHHHHHHHHHHHHHH KIRRQGSPGQVREHIYLLTIKGREAMASLAEAAPELAWYRDRAAIVTRVAGDKGGKALKD HHHCCCCCCHHHCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH RQYLQAEYAGTELNHIIAPITERVRKRLDAILERAGR HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MVSEVSGASDRQSAVRLLACIDAAGATADADQWGEDVVATLHAQSRLQALDFWMRNPDYL CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH ANELLTVFEETGDASLIHLAERIFDDREPDLRRLPMIRYHFGAFEPLDNALSILVAAGLL HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHCCCCCHHHHHHHHHHHHHHH KIRRQGSPGQVREHIYLLTIKGREAMASLAEAAPELAWYRDRAAIVTRVAGDKGGKALKD HHHCCCCCCHHHCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH RQYLQAEYAGTELNHIIAPITERVRKRLDAILERAGR HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA