Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is qorA [H]
Identifier: 103485859
GI number: 103485859
Start: 375523
End: 376521
Strand: Direct
Name: qorA [H]
Synonym: Sala_0364
Alternate gene names: 103485859
Gene position: 375523-376521 (Clockwise)
Preceding gene: 103485857
Following gene: 103485861
Centisome position: 11.23
GC content: 68.97
Gene sequence:
>999_bases GTGACCAGCCTGCCAGCAGACATGACTGCCGTCGCCATCGGCGCGCCGGGGGGACCGGAGATGTTGCAGTCCGTGACGCG GCCGGTGCCGCAGCCCGGTGCCGAAGAGGTGCTGATCCGCGTCGCCGCGGCAGGGGTCAACCGCCCCGACGTGCTGCAGC GCATGGGCCTGTATCCGCCGCCGCCGGGCGCGTCGGACCTGCCGGGGCTTGAGGTCGCGGGCACAGTCGTGGCGGTCGGA CCGGGGGGCGATCCCGAAATGCTGGGACAGGAGGTGTGCGCGCTCGTCGCCGGCGGCGGCTATGCCGAATATTGCACGGC GCCGGTAGGAAGCTGTTTGCCCGTGCCGAAGGGCTTTTCGATGGCCGAGGCCGCGGCGCTGCCCGAAACCGTCTTTACCG TGTGGCACAATCTGTTCGAGCGCGGCTATGTGCAGGAGGGTGAGACGGTGCTGGTCCACGGTGGCACGAGCGGTATCGGC ACGACCGCGATCGGCCTTTGCAAGCTGTTCGGCATCAGGGTGATCGTGACCTGTGGCAGCGCCGACAAATGCGACGCGGC GCGCGCCCTGGGCGCCGACCTCGCCGTCGATTATTCGAACGAGGATTATGTCGCGGCGGTGAAGGATTTTACCGGCGGGG CGGGGGTCCATGTCGTGCTCGACATGGTCGGCGGCGATTATGTGCCGCGCAATCTCGACTGCCTCGCCGACGACGGCCGC CACGTGTCCATCGCCTTCCAGCGCGGTGCCAAGGTCGAGATCGACGTTTCGCAGGTGATGCGCCGCCGCCTGACGCTGAC CGGATCGACGTTGCGCGCCCGCAGCGCAGCCTTCAAGGCGCTGCTCGCCGACGAGATCCACCGCACGCTTTGGCCGCGCC TAGCCGAAGGTGCGTGGAAGCCGGCGATGGATCAGGCCTTTGCCCTGACCGACGCCGCCGCCGCCCACGCGCGGATGCAG GCGGGCGCGCACGTCGGCAAGATCGTGCTGACCGTTTAA
Upstream 100 bases:
>100_bases GCCATCCTCCTGAAATGACGCGCGACTGTTGACCCGTGTCGCCGCACTGTCAATAAGGCGCGGCAGGGCGTAGGAAACCG GACCAGTGGGGGAATAAAGC
Downstream 100 bases:
>100_bases CCCGGCGCGTCGGCGAGCGCGGGCGGGGCTGACGTGGCTGTCGGTAGTCGGCCGACGCCCTCAGGCGGGTTCGAGAGTCC GTGGTTCGAGGATCAGGCGG
Product: zinc-binding alcohol dehydrogenase
Products: NA
Alternate protein names: NADPH:quinone reductase 1; Zeta-crystallin homolog protein [H]
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MTSLPADMTAVAIGAPGGPEMLQSVTRPVPQPGAEEVLIRVAAAGVNRPDVLQRMGLYPPPPGASDLPGLEVAGTVVAVG PGGDPEMLGQEVCALVAGGGYAEYCTAPVGSCLPVPKGFSMAEAAALPETVFTVWHNLFERGYVQEGETVLVHGGTSGIG TTAIGLCKLFGIRVIVTCGSADKCDAARALGADLAVDYSNEDYVAAVKDFTGGAGVHVVLDMVGGDYVPRNLDCLADDGR HVSIAFQRGAKVEIDVSQVMRRRLTLTGSTLRARSAAFKALLADEIHRTLWPRLAEGAWKPAMDQAFALTDAAAAHARMQ AGAHVGKIVLTV
Sequences:
>Translated_332_residues MTSLPADMTAVAIGAPGGPEMLQSVTRPVPQPGAEEVLIRVAAAGVNRPDVLQRMGLYPPPPGASDLPGLEVAGTVVAVG PGGDPEMLGQEVCALVAGGGYAEYCTAPVGSCLPVPKGFSMAEAAALPETVFTVWHNLFERGYVQEGETVLVHGGTSGIG TTAIGLCKLFGIRVIVTCGSADKCDAARALGADLAVDYSNEDYVAAVKDFTGGAGVHVVLDMVGGDYVPRNLDCLADDGR HVSIAFQRGAKVEIDVSQVMRRRLTLTGSTLRARSAAFKALLADEIHRTLWPRLAEGAWKPAMDQAFALTDAAAAHARMQ AGAHVGKIVLTV >Mature_331_residues TSLPADMTAVAIGAPGGPEMLQSVTRPVPQPGAEEVLIRVAAAGVNRPDVLQRMGLYPPPPGASDLPGLEVAGTVVAVGP GGDPEMLGQEVCALVAGGGYAEYCTAPVGSCLPVPKGFSMAEAAALPETVFTVWHNLFERGYVQEGETVLVHGGTSGIGT TAIGLCKLFGIRVIVTCGSADKCDAARALGADLAVDYSNEDYVAAVKDFTGGAGVHVVLDMVGGDYVPRNLDCLADDGRH VSIAFQRGAKVEIDVSQVMRRRLTLTGSTLRARSAAFKALLADEIHRTLWPRLAEGAWKPAMDQAFALTDAAAAHARMQA GAHVGKIVLTV
Specific function: Unknown
COG id: COG0604
COG function: function code CR; NADPH:quinone reductase and related Zn-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily [H]
Homologues:
Organism=Homo sapiens, GI22538446, Length=330, Percent_Identity=40.3030303030303, Blast_Score=240, Evalue=1e-63, Organism=Homo sapiens, GI22538444, Length=330, Percent_Identity=40.3030303030303, Blast_Score=240, Evalue=1e-63, Organism=Homo sapiens, GI194239674, Length=327, Percent_Identity=28.7461773700306, Blast_Score=126, Evalue=3e-29, Organism=Homo sapiens, GI13236495, Length=327, Percent_Identity=28.7461773700306, Blast_Score=126, Evalue=3e-29, Organism=Homo sapiens, GI18379349, Length=323, Percent_Identity=29.4117647058824, Blast_Score=115, Evalue=7e-26, Organism=Homo sapiens, GI24308257, Length=343, Percent_Identity=28.8629737609329, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI194239676, Length=203, Percent_Identity=31.5270935960591, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI28557745, Length=245, Percent_Identity=32.6530612244898, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI41872631, Length=322, Percent_Identity=28.2608695652174, Blast_Score=90, Evalue=4e-18, Organism=Homo sapiens, GI197927207, Length=196, Percent_Identity=25, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI47519420, Length=246, Percent_Identity=29.6747967479675, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1790485, Length=326, Percent_Identity=32.2085889570552, Blast_Score=127, Evalue=1e-30, Organism=Caenorhabditis elegans, GI17507255, Length=329, Percent_Identity=28.2674772036474, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI212642053, Length=318, Percent_Identity=24.5283018867925, Blast_Score=78, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17536829, Length=218, Percent_Identity=27.9816513761468, Blast_Score=73, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6319520, Length=337, Percent_Identity=27.299703264095, Blast_Score=101, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6323961, Length=309, Percent_Identity=25.5663430420712, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6324486, Length=284, Percent_Identity=26.4084507042254, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6319621, Length=356, Percent_Identity=24.7191011235955, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581345, Length=284, Percent_Identity=27.4647887323944, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI221330659, Length=284, Percent_Identity=26.4084507042254, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI19920632, Length=284, Percent_Identity=26.4084507042254, Blast_Score=77, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013149 - InterPro: IPR013154 - InterPro: IPR002085 - InterPro: IPR011032 - InterPro: IPR016040 - InterPro: IPR002364 [H]
Pfam domain/function: PF08240 ADH_N; PF00107 ADH_zinc_N [H]
EC number: =1.6.5.5 [H]
Molecular weight: Translated: 34384; Mature: 34253
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLPADMTAVAIGAPGGPEMLQSVTRPVPQPGAEEVLIRVAAAGVNRPDVLQRMGLYPP CCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCC PPGASDLPGLEVAGTVVAVGPGGDPEMLGQEVCALVAGGGYAEYCTAPVGSCLPVPKGFS CCCCCCCCCCEECCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCC MAEAAALPETVFTVWHNLFERGYVQEGETVLVHGGTSGIGTTAIGLCKLFGIRVIVTCGS HHHHHHCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCEEEEEEECC ADKCDAARALGADLAVDYSNEDYVAAVKDFTGGAGVHVVLDMVGGDYVPRNLDCLADDGR CCCHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCEECCCCC HVSIAFQRGAKVEIDVSQVMRRRLTLTGSTLRARSAAFKALLADEIHRTLWPRLAEGAWK EEEEEEECCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PAMDQAFALTDAAAAHARMQAGAHVGKIVLTV CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC >Mature Secondary Structure TSLPADMTAVAIGAPGGPEMLQSVTRPVPQPGAEEVLIRVAAAGVNRPDVLQRMGLYPP CCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCC PPGASDLPGLEVAGTVVAVGPGGDPEMLGQEVCALVAGGGYAEYCTAPVGSCLPVPKGFS CCCCCCCCCCEECCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCC MAEAAALPETVFTVWHNLFERGYVQEGETVLVHGGTSGIGTTAIGLCKLFGIRVIVTCGS HHHHHHCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCEEEEEEECC ADKCDAARALGADLAVDYSNEDYVAAVKDFTGGAGVHVVLDMVGGDYVPRNLDCLADDGR CCCHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCEECCCCC HVSIAFQRGAKVEIDVSQVMRRRLTLTGSTLRARSAAFKALLADEIHRTLWPRLAEGAWK EEEEEEECCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PAMDQAFALTDAAAAHARMQAGAHVGKIVLTV CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8265357; 9278503; 7602590 [H]