Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103485850

Identifier: 103485850

GI number: 103485850

Start: 369519

End: 369845

Strand: Direct

Name: 103485850

Synonym: Sala_0355

Alternate gene names: NA

Gene position: 369519-369845 (Clockwise)

Preceding gene: 103485841

Following gene: 103485851

Centisome position: 11.05

GC content: 62.39

Gene sequence:

>327_bases
ATGACCACATTCGACGATCGTGAACGGGCATTCGAAACCAAATTCGCACGCGACCAGGAGGTCCACTTTCGCATCATCGC
CCGCCGCAACCGGCTGCTCGGCGAATGGGCGGCCGAACGCATGGGGCTGACCCCCGAAGAAACCGATGCCTATGCCAAGG
CGGTCGTCCAGGCCGATTTCGAGGAAGCGGGGGACGAGGATGTCATCCGCAAGCTGGCGGGCGACCTGACCGCCGCGAAT
GTCGATATCAGCGATGCGGAGATTCGCGCCATGCTGAACGACAAGGCCGCCGAAGCGCGGCGCCAGTTCATCGATAGCGC
GAATTGA

Upstream 100 bases:

>100_bases
CCTTCGCATCCGAAAGGGAAGTGATCTGCCGCACAGGCAGCTTGCGCCGGGGAGACGGGCCACCTATCTGCAAGGACAAG
GCTCAAACGGCGAGGACAAG

Downstream 100 bases:

>100_bases
GGCCGCCGCGATGGGCATGCGCGAGGACGAATTGAAGGCGATGATCGAGGCGGCGTTTCCGGGCGCCGCGGTAACGATCA
CCGACCTTGCCGGCGACAAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MTTFDDRERAFETKFARDQEVHFRIIARRNRLLGEWAAERMGLTPEETDAYAKAVVQADFEEAGDEDVIRKLAGDLTAAN
VDISDAEIRAMLNDKAAEARRQFIDSAN

Sequences:

>Translated_108_residues
MTTFDDRERAFETKFARDQEVHFRIIARRNRLLGEWAAERMGLTPEETDAYAKAVVQADFEEAGDEDVIRKLAGDLTAAN
VDISDAEIRAMLNDKAAEARRQFIDSAN
>Mature_107_residues
TTFDDRERAFETKFARDQEVHFRIIARRNRLLGEWAAERMGLTPEETDAYAKAVVQADFEEAGDEDVIRKLAGDLTAANV
DISDAEIRAMLNDKAAEARRQFIDSAN

Specific function: Unknown

COG id: COG5467

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12250; Mature: 12118

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTFDDRERAFETKFARDQEVHFRIIARRNRLLGEWAAERMGLTPEETDAYAKAVVQADF
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EEAGDEDVIRKLAGDLTAANVDISDAEIRAMLNDKAAEARRQFIDSAN
HHCCCHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTFDDRERAFETKFARDQEVHFRIIARRNRLLGEWAAERMGLTPEETDAYAKAVVQADF
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EEAGDEDVIRKLAGDLTAANVDISDAEIRAMLNDKAAEARRQFIDSAN
HHCCCHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA