Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485850
Identifier: 103485850
GI number: 103485850
Start: 369519
End: 369845
Strand: Direct
Name: 103485850
Synonym: Sala_0355
Alternate gene names: NA
Gene position: 369519-369845 (Clockwise)
Preceding gene: 103485841
Following gene: 103485851
Centisome position: 11.05
GC content: 62.39
Gene sequence:
>327_bases ATGACCACATTCGACGATCGTGAACGGGCATTCGAAACCAAATTCGCACGCGACCAGGAGGTCCACTTTCGCATCATCGC CCGCCGCAACCGGCTGCTCGGCGAATGGGCGGCCGAACGCATGGGGCTGACCCCCGAAGAAACCGATGCCTATGCCAAGG CGGTCGTCCAGGCCGATTTCGAGGAAGCGGGGGACGAGGATGTCATCCGCAAGCTGGCGGGCGACCTGACCGCCGCGAAT GTCGATATCAGCGATGCGGAGATTCGCGCCATGCTGAACGACAAGGCCGCCGAAGCGCGGCGCCAGTTCATCGATAGCGC GAATTGA
Upstream 100 bases:
>100_bases CCTTCGCATCCGAAAGGGAAGTGATCTGCCGCACAGGCAGCTTGCGCCGGGGAGACGGGCCACCTATCTGCAAGGACAAG GCTCAAACGGCGAGGACAAG
Downstream 100 bases:
>100_bases GGCCGCCGCGATGGGCATGCGCGAGGACGAATTGAAGGCGATGATCGAGGCGGCGTTTCCGGGCGCCGCGGTAACGATCA CCGACCTTGCCGGCGACAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MTTFDDRERAFETKFARDQEVHFRIIARRNRLLGEWAAERMGLTPEETDAYAKAVVQADFEEAGDEDVIRKLAGDLTAAN VDISDAEIRAMLNDKAAEARRQFIDSAN
Sequences:
>Translated_108_residues MTTFDDRERAFETKFARDQEVHFRIIARRNRLLGEWAAERMGLTPEETDAYAKAVVQADFEEAGDEDVIRKLAGDLTAAN VDISDAEIRAMLNDKAAEARRQFIDSAN >Mature_107_residues TTFDDRERAFETKFARDQEVHFRIIARRNRLLGEWAAERMGLTPEETDAYAKAVVQADFEEAGDEDVIRKLAGDLTAANV DISDAEIRAMLNDKAAEARRQFIDSAN
Specific function: Unknown
COG id: COG5467
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12250; Mature: 12118
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTFDDRERAFETKFARDQEVHFRIIARRNRLLGEWAAERMGLTPEETDAYAKAVVQADF CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH EEAGDEDVIRKLAGDLTAANVDISDAEIRAMLNDKAAEARRQFIDSAN HHCCCHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TTFDDRERAFETKFARDQEVHFRIIARRNRLLGEWAAERMGLTPEETDAYAKAVVQADF CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH EEAGDEDVIRKLAGDLTAANVDISDAEIRAMLNDKAAEARRQFIDSAN HHCCCHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA