Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485815
Identifier: 103485815
GI number: 103485815
Start: 327984
End: 328361
Strand: Direct
Name: 103485815
Synonym: Sala_0320
Alternate gene names: NA
Gene position: 327984-328361 (Clockwise)
Preceding gene: 103485814
Following gene: 103485816
Centisome position: 9.8
GC content: 70.9
Gene sequence:
>378_bases GTGGGCGCTGACCCGTTGCGCCCCGACGAGCGCGGCTTCACCCTGCTCGAAATGCTCGTCGCCTTGAGCATCATCAGCAT CGCCGCGCTGACGCTGGTGCGGCTCGACGCCTATGCGGTGCGCACGGCGGGTGACCTCGATGTCAGCACGGTTGCGGGGA TCGTCGCGCAGAACCGCGCGGTCGAGCTGTGGACCGACCCCGCGCCGCCGACGATCGGCAACAGCGCGATCGGCGTCACG AACGCCGGGCGCAACTGGCGCATCGACCAGCGCGTGACGAAAACCGCCGACGCGGCGCTGCTGCGTATCGACCTGCTCGT CCGGCCCGAAAGCGGCAGCGGGCAGGCGGCGCTGACGATCATCCGGCCCGCGCGATGA
Upstream 100 bases:
>100_bases TTCGATCGCGTCGGCACCAGCCCGACGCCGCAGACGGTCGTGCTGTCGGGCGGCGACGCGCGCGAGATGGTGCGCGTGTC GGCGACGGGGGAGGTCAGCC
Downstream 100 bases:
>100_bases CCGATCAGCGCGGCTTCACCCTGGTCGAGATGCTCGTCGCGCTGTCGCTGTTCGCGGCGATTGCGGCGATCGGGGTCGGC CTGCTGCGCAGCAGCATCGA
Product: general secretion pathway protein I
Products: NA
Alternate protein names: Type II Secretion System Protein I; Type II Secretory Pathway Component PulI
Number of amino acids: Translated: 125; Mature: 124
Protein sequence:
>125_residues MGADPLRPDERGFTLLEMLVALSIISIAALTLVRLDAYAVRTAGDLDVSTVAGIVAQNRAVELWTDPAPPTIGNSAIGVT NAGRNWRIDQRVTKTADAALLRIDLLVRPESGSGQAALTIIRPAR
Sequences:
>Translated_125_residues MGADPLRPDERGFTLLEMLVALSIISIAALTLVRLDAYAVRTAGDLDVSTVAGIVAQNRAVELWTDPAPPTIGNSAIGVT NAGRNWRIDQRVTKTADAALLRIDLLVRPESGSGQAALTIIRPAR >Mature_124_residues GADPLRPDERGFTLLEMLVALSIISIAALTLVRLDAYAVRTAGDLDVSTVAGIVAQNRAVELWTDPAPPTIGNSAIGVTN AGRNWRIDQRVTKTADAALLRIDLLVRPESGSGQAALTIIRPAR
Specific function: Unknown
COG id: COG2165
COG function: function code NU; Type II secretory pathway, pseudopilin PulG
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13256; Mature: 13125
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGADPLRPDERGFTLLEMLVALSIISIAALTLVRLDAYAVRTAGDLDVSTVAGIVAQNRA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCE VELWTDPAPPTIGNSAIGVTNAGRNWRIDQRVTKTADAALLRIDLLVRPESGSGQAALTI EEEEECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHEEEEEEEEEECCCCCCCEEEEE IRPAR EECCC >Mature Secondary Structure GADPLRPDERGFTLLEMLVALSIISIAALTLVRLDAYAVRTAGDLDVSTVAGIVAQNRA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCE VELWTDPAPPTIGNSAIGVTNAGRNWRIDQRVTKTADAALLRIDLLVRPESGSGQAALTI EEEEECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHEEEEEEEEEECCCCCCCEEEEE IRPAR EECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA