Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485802
Identifier: 103485802
GI number: 103485802
Start: 311012
End: 311851
Strand: Direct
Name: 103485802
Synonym: Sala_0307
Alternate gene names: NA
Gene position: 311012-311851 (Clockwise)
Preceding gene: 103485801
Following gene: 103485806
Centisome position: 9.3
GC content: 62.86
Gene sequence:
>840_bases ATGCGCGCCCTTCTCCTTTCACTCGCCCTGCTTGCCCCCTTCGCGTCGGCGATCGCCAACGACGACGTCATCGACACCCA CGTCCATCTGTGGAACGGCGAGGCATCGCTCGCCGAATATCGCGCAAAACTGAAAGCCGCGGGGCTTTCGGTCGAGCGAT TCGGCGCGATGTGGTTCGGTGGTCCCAATCAGGCGCGCGCGGGCAATCCCGCCGACATCAGCGCGCGCAACGACGCGCTG ATCGCGCTCGGCAAAAAACATCCCGACATGATTCCGATCGCGACCGTCCACCCCTATGACGGCGACGCCGCGCTGGCCGA AGTGACGCGCGTCGCGTCGCGCGGGGTCAAGCTGCTGAAAATCCATCCGCACACACAGGGGTTCGACGCCGCCGACCCGC GCGTGCTGACGCTCGTCAAACATGCGGGCGCATCGGGGCTGGTCGTGCTGCTCGACAATGCCAGCATTGTGCCCGCCGAC AATGAAAAGCTGTTCAACCTCGCGCTCGCGGCGCCGAAGACGAAGTTCATCTTTGCGCATATGGGCGGGATGGGGTTCCG CTTCTGGAACATATTGGCGCTCGCGCGCACGGCCGAGGGGCTGTTTGCCGAGAATATATTCTTCGACATTTCGGGCGTGA CGCTGTTCGCCGATTCGCCGGTCAAGGACGAATATGTCTGGACGATCCGCAACGTCGGTGTCGACCAGGTGCTGATCGCA TCGGACTATCCGCAGATGTCACTCGCGAAGACGCTCGAAGCCTTCGACAAGCTGGACCTGACCGAAGAGGAACGCGCGAA GATCCGCTCGGGCAATGCCAAACGGCTGCTGGGGCTTTAG
Upstream 100 bases:
>100_bases ATTTCGACGCCTCGAACGGGTAATTAATGGGTCCTGACCCTAATTGGCGGCGGCGCGCGGTTGTGGCAGAGGAACGCCGT CCATTACCCGCGGAGACATG
Downstream 100 bases:
>100_bases GAAGCGATGCCCCGCCCCCGACATTGAGACGCAGGAGAGCGGGAAGCGGGGCGAGCGCGCTTAAGCAGGGCGCGGATTGC CCGACGATGAACGAAGGGAC
Product: amidohydrolase 2
Products: NA
Alternate protein names: Amidohydrolase Family Protein
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MRALLLSLALLAPFASAIANDDVIDTHVHLWNGEASLAEYRAKLKAAGLSVERFGAMWFGGPNQARAGNPADISARNDAL IALGKKHPDMIPIATVHPYDGDAALAEVTRVASRGVKLLKIHPHTQGFDAADPRVLTLVKHAGASGLVVLLDNASIVPAD NEKLFNLALAAPKTKFIFAHMGGMGFRFWNILALARTAEGLFAENIFFDISGVTLFADSPVKDEYVWTIRNVGVDQVLIA SDYPQMSLAKTLEAFDKLDLTEEERAKIRSGNAKRLLGL
Sequences:
>Translated_279_residues MRALLLSLALLAPFASAIANDDVIDTHVHLWNGEASLAEYRAKLKAAGLSVERFGAMWFGGPNQARAGNPADISARNDAL IALGKKHPDMIPIATVHPYDGDAALAEVTRVASRGVKLLKIHPHTQGFDAADPRVLTLVKHAGASGLVVLLDNASIVPAD NEKLFNLALAAPKTKFIFAHMGGMGFRFWNILALARTAEGLFAENIFFDISGVTLFADSPVKDEYVWTIRNVGVDQVLIA SDYPQMSLAKTLEAFDKLDLTEEERAKIRSGNAKRLLGL >Mature_279_residues MRALLLSLALLAPFASAIANDDVIDTHVHLWNGEASLAEYRAKLKAAGLSVERFGAMWFGGPNQARAGNPADISARNDAL IALGKKHPDMIPIATVHPYDGDAALAEVTRVASRGVKLLKIHPHTQGFDAADPRVLTLVKHAGASGLVVLLDNASIVPAD NEKLFNLALAAPKTKFIFAHMGGMGFRFWNILALARTAEGLFAENIFFDISGVTLFADSPVKDEYVWTIRNVGVDQVLIA SDYPQMSLAKTLEAFDKLDLTEEERAKIRSGNAKRLLGL
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30137; Mature: 30137
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRALLLSLALLAPFASAIANDDVIDTHVHLWNGEASLAEYRAKLKAAGLSVERFGAMWFG CHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHCEEEEC GPNQARAGNPADISARNDALIALGKKHPDMIPIATVHPYDGDAALAEVTRVASRGVKLLK CCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCEEEEE IHPHTQGFDAADPRVLTLVKHAGASGLVVLLDNASIVPADNEKLFNLALAAPKTKFIFAH ECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCEEECCCCCCEEEEEEECCCCEEEEEE MGGMGFRFWNILALARTAEGLFAENIFFDISGVTLFADSPVKDEYVWTIRNVGVDQVLIA CCCCHHHHHHHHHHHHHHCCCEECCEEEEECCEEEEECCCCCCCEEEEEECCCCCEEEEE SDYPQMSLAKTLEAFDKLDLTEEERAKIRSGNAKRLLGL CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEECCC >Mature Secondary Structure MRALLLSLALLAPFASAIANDDVIDTHVHLWNGEASLAEYRAKLKAAGLSVERFGAMWFG CHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHCEEEEC GPNQARAGNPADISARNDALIALGKKHPDMIPIATVHPYDGDAALAEVTRVASRGVKLLK CCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCEEEEE IHPHTQGFDAADPRVLTLVKHAGASGLVVLLDNASIVPADNEKLFNLALAAPKTKFIFAH ECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCEEECCCCCCEEEEEEECCCCEEEEEE MGGMGFRFWNILALARTAEGLFAENIFFDISGVTLFADSPVKDEYVWTIRNVGVDQVLIA CCCCHHHHHHHHHHHHHHCCCEECCEEEEECCEEEEECCCCCCCEEEEEECCCCCEEEEE SDYPQMSLAKTLEAFDKLDLTEEERAKIRSGNAKRLLGL CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA