Definition | Sphingopyxis alaskensis RB2256, complete genome. |
---|---|
Accession | NC_008048 |
Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103485771
Identifier: 103485771
GI number: 103485771
Start: 274612
End: 275166
Strand: Direct
Name: 103485771
Synonym: Sala_0276
Alternate gene names: NA
Gene position: 274612-275166 (Clockwise)
Preceding gene: 103485764
Following gene: 103485772
Centisome position: 8.21
GC content: 62.7
Gene sequence:
>555_bases ATGACGAGAAAGCGGAAGCGGCGAGTCTTGAGGAGACAGGCGATGAAGAAGGTGATGACGATTGCGGCCCTCGGCACGCT TCTGGCGCTGTCGGGTTGCGGCAAGGCGGAGAATGCCGGCGGCACGGTGAAGCGCGAGGCGGGCAACTGGAAAACCGAGG TCAAGCTGGTGAAGTTCGAGATTCCGGGGATGCCGCCCGAAATGAAGGATGGCATGACCAGGATGGTCGAGGGTGCCAGC GGCATGGACCAGTGCTTCACGCAGGAACAGGTCGACAAGGAAGATATCGCCGCCGAACTCGCCAAGGGGCCGGGCAATGG CGGCGAATGCACCTGGTCGAAAAAGGATGTCGCGGGCGGCAAGATCGACGTCGCGGGCACCTGCACCGCCAACGGCCAGA CGGTCGAAATGGCGATGAACGGCACGATGGAAGCGAAAAGGTCCGACGTGACGATCACGACCAGGGGCAAGGTGCCGACC GGCGGCGACATGGAAATGGTGATGCAGATGACGAGCACGCACACCGGCCCGTGCAAGGCACCGGCTACAACCTGA
Upstream 100 bases:
>100_bases GGCACATAGCCTTCGGCGGTGTCGATTTCGTCGAGCGAGGTGCGAATCTGGATTGCCATTGCCGCCAATATGGTATCGAT GGAGCGGGTCCACAATCGCA
Downstream 100 bases:
>100_bases AACCCCGGGTAATTGCCGGATGATGGGGGCGTCAGCCATGCTGGCGCCCTTGTCGGTTGGATGAGAAGGGAGCGTGTAAT GCTGGGCTATGTGACGATGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 184; Mature: 183
Protein sequence:
>184_residues MTRKRKRRVLRRQAMKKVMTIAALGTLLALSGCGKAENAGGTVKREAGNWKTEVKLVKFEIPGMPPEMKDGMTRMVEGAS GMDQCFTQEQVDKEDIAAELAKGPGNGGECTWSKKDVAGGKIDVAGTCTANGQTVEMAMNGTMEAKRSDVTITTRGKVPT GGDMEMVMQMTSTHTGPCKAPATT
Sequences:
>Translated_184_residues MTRKRKRRVLRRQAMKKVMTIAALGTLLALSGCGKAENAGGTVKREAGNWKTEVKLVKFEIPGMPPEMKDGMTRMVEGAS GMDQCFTQEQVDKEDIAAELAKGPGNGGECTWSKKDVAGGKIDVAGTCTANGQTVEMAMNGTMEAKRSDVTITTRGKVPT GGDMEMVMQMTSTHTGPCKAPATT >Mature_183_residues TRKRKRRVLRRQAMKKVMTIAALGTLLALSGCGKAENAGGTVKREAGNWKTEVKLVKFEIPGMPPEMKDGMTRMVEGASG MDQCFTQEQVDKEDIAAELAKGPGNGGECTWSKKDVAGGKIDVAGTCTANGQTVEMAMNGTMEAKRSDVTITTRGKVPTG GDMEMVMQMTSTHTGPCKAPATT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19590; Mature: 19459
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 8.2 %Met (Translated Protein) 10.9 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 7.7 %Met (Mature Protein) 10.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRKRKRRVLRRQAMKKVMTIAALGTLLALSGCGKAENAGGTVKREAGNWKTEVKLVKFE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEEEEEE IPGMPPEMKDGMTRMVEGASGMDQCFTQEQVDKEDIAAELAKGPGNGGECTWSKKDVAGG CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC KIDVAGTCTANGQTVEMAMNGTMEAKRSDVTITTRGKVPTGGDMEMVMQMTSTHTGPCKA EEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCC PATT CCCC >Mature Secondary Structure TRKRKRRVLRRQAMKKVMTIAALGTLLALSGCGKAENAGGTVKREAGNWKTEVKLVKFE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEEEEEE IPGMPPEMKDGMTRMVEGASGMDQCFTQEQVDKEDIAAELAKGPGNGGECTWSKKDVAGG CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC KIDVAGTCTANGQTVEMAMNGTMEAKRSDVTITTRGKVPTGGDMEMVMQMTSTHTGPCKA EEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCC PATT CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA