Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103485771

Identifier: 103485771

GI number: 103485771

Start: 274612

End: 275166

Strand: Direct

Name: 103485771

Synonym: Sala_0276

Alternate gene names: NA

Gene position: 274612-275166 (Clockwise)

Preceding gene: 103485764

Following gene: 103485772

Centisome position: 8.21

GC content: 62.7

Gene sequence:

>555_bases
ATGACGAGAAAGCGGAAGCGGCGAGTCTTGAGGAGACAGGCGATGAAGAAGGTGATGACGATTGCGGCCCTCGGCACGCT
TCTGGCGCTGTCGGGTTGCGGCAAGGCGGAGAATGCCGGCGGCACGGTGAAGCGCGAGGCGGGCAACTGGAAAACCGAGG
TCAAGCTGGTGAAGTTCGAGATTCCGGGGATGCCGCCCGAAATGAAGGATGGCATGACCAGGATGGTCGAGGGTGCCAGC
GGCATGGACCAGTGCTTCACGCAGGAACAGGTCGACAAGGAAGATATCGCCGCCGAACTCGCCAAGGGGCCGGGCAATGG
CGGCGAATGCACCTGGTCGAAAAAGGATGTCGCGGGCGGCAAGATCGACGTCGCGGGCACCTGCACCGCCAACGGCCAGA
CGGTCGAAATGGCGATGAACGGCACGATGGAAGCGAAAAGGTCCGACGTGACGATCACGACCAGGGGCAAGGTGCCGACC
GGCGGCGACATGGAAATGGTGATGCAGATGACGAGCACGCACACCGGCCCGTGCAAGGCACCGGCTACAACCTGA

Upstream 100 bases:

>100_bases
GGCACATAGCCTTCGGCGGTGTCGATTTCGTCGAGCGAGGTGCGAATCTGGATTGCCATTGCCGCCAATATGGTATCGAT
GGAGCGGGTCCACAATCGCA

Downstream 100 bases:

>100_bases
AACCCCGGGTAATTGCCGGATGATGGGGGCGTCAGCCATGCTGGCGCCCTTGTCGGTTGGATGAGAAGGGAGCGTGTAAT
GCTGGGCTATGTGACGATGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MTRKRKRRVLRRQAMKKVMTIAALGTLLALSGCGKAENAGGTVKREAGNWKTEVKLVKFEIPGMPPEMKDGMTRMVEGAS
GMDQCFTQEQVDKEDIAAELAKGPGNGGECTWSKKDVAGGKIDVAGTCTANGQTVEMAMNGTMEAKRSDVTITTRGKVPT
GGDMEMVMQMTSTHTGPCKAPATT

Sequences:

>Translated_184_residues
MTRKRKRRVLRRQAMKKVMTIAALGTLLALSGCGKAENAGGTVKREAGNWKTEVKLVKFEIPGMPPEMKDGMTRMVEGAS
GMDQCFTQEQVDKEDIAAELAKGPGNGGECTWSKKDVAGGKIDVAGTCTANGQTVEMAMNGTMEAKRSDVTITTRGKVPT
GGDMEMVMQMTSTHTGPCKAPATT
>Mature_183_residues
TRKRKRRVLRRQAMKKVMTIAALGTLLALSGCGKAENAGGTVKREAGNWKTEVKLVKFEIPGMPPEMKDGMTRMVEGASG
MDQCFTQEQVDKEDIAAELAKGPGNGGECTWSKKDVAGGKIDVAGTCTANGQTVEMAMNGTMEAKRSDVTITTRGKVPTG
GDMEMVMQMTSTHTGPCKAPATT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19590; Mature: 19459

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
8.2 %Met     (Translated Protein)
10.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
7.7 %Met     (Mature Protein)
10.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRKRKRRVLRRQAMKKVMTIAALGTLLALSGCGKAENAGGTVKREAGNWKTEVKLVKFE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEEEEEE
IPGMPPEMKDGMTRMVEGASGMDQCFTQEQVDKEDIAAELAKGPGNGGECTWSKKDVAGG
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
KIDVAGTCTANGQTVEMAMNGTMEAKRSDVTITTRGKVPTGGDMEMVMQMTSTHTGPCKA
EEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCC
PATT
CCCC
>Mature Secondary Structure 
TRKRKRRVLRRQAMKKVMTIAALGTLLALSGCGKAENAGGTVKREAGNWKTEVKLVKFE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEEEEEE
IPGMPPEMKDGMTRMVEGASGMDQCFTQEQVDKEDIAAELAKGPGNGGECTWSKKDVAGG
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
KIDVAGTCTANGQTVEMAMNGTMEAKRSDVTITTRGKVPTGGDMEMVMQMTSTHTGPCKA
EEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCC
PATT
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA