Definition | Sphingopyxis alaskensis RB2256, complete genome. |
---|---|
Accession | NC_008048 |
Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103485764
Identifier: 103485764
GI number: 103485764
Start: 268649
End: 269086
Strand: Direct
Name: 103485764
Synonym: Sala_0269
Alternate gene names: NA
Gene position: 268649-269086 (Clockwise)
Preceding gene: 103485763
Following gene: 103485771
Centisome position: 8.03
GC content: 59.82
Gene sequence:
>438_bases ATGACCGAAGTTGGAAAAACGCCGTGGCATCTGTGGGTGGTCGGCGTTCTTGCCGTGCTGGTGAATGCCTTTCCCGTGGT CGACTTCACGCTGACCAATGTGGAGAATGAATTCTGGCTGTCGCCGCTGACGAGCGACCAGCGCGTTTTCATCCTCGGCG CGCCTTTGTGGGCGGACGTCTGCTGGGCGCTCGGCGGTTTTGGCGCCTTCATCGGATCGGTGCTGCTGCTCCTGCGTTCG CGTCATGCGGTGACCGCTTATATCGTGTCGATCGCCGGTCTCGCTGGATCGACCCTCTACCAGCATATACTGAACGGCGA AACAACGCGCGCGCTGTTCCAGAATGTCGCAATGATCGTAACGGCGGTCATCTGGGTCATCATGCTGGCGCTGTTCTTCT ACGCGCGCGCGATGAAGGCGAAGGGTGTTCTGCGCTGA
Upstream 100 bases:
>100_bases TTCGACCGCAACATCGCTGTATTGCGCGACTATATCACTATATTGCTGGCGAGCGCAAAGAATGATAGCCTAGCGTGACT TTTCGGAGGGGGAGGGTGCA
Downstream 100 bases:
>100_bases CCATGACCGCTTTGGGGTGGTGAGCGGCCTTTCCTCTTTCCCCTCTCCCGTCGGGAGAGGGATACGCAGGCTAGGTTGCG TAGCAACCTAGCCGAAGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MTEVGKTPWHLWVVGVLAVLVNAFPVVDFTLTNVENEFWLSPLTSDQRVFILGAPLWADVCWALGGFGAFIGSVLLLLRS RHAVTAYIVSIAGLAGSTLYQHILNGETTRALFQNVAMIVTAVIWVIMLALFFYARAMKAKGVLR
Sequences:
>Translated_145_residues MTEVGKTPWHLWVVGVLAVLVNAFPVVDFTLTNVENEFWLSPLTSDQRVFILGAPLWADVCWALGGFGAFIGSVLLLLRS RHAVTAYIVSIAGLAGSTLYQHILNGETTRALFQNVAMIVTAVIWVIMLALFFYARAMKAKGVLR >Mature_144_residues TEVGKTPWHLWVVGVLAVLVNAFPVVDFTLTNVENEFWLSPLTSDQRVFILGAPLWADVCWALGGFGAFIGSVLLLLRSR HAVTAYIVSIAGLAGSTLYQHILNGETTRALFQNVAMIVTAVIWVIMLALFFYARAMKAKGVLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15937; Mature: 15806
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEVGKTPWHLWVVGVLAVLVNAFPVVDFTLTNVENEFWLSPLTSDQRVFILGAPLWADV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHECCCCCHHCCCCCCCCCEEEEEECHHHHHH CWALGGFGAFIGSVLLLLRSRHAVTAYIVSIAGLAGSTLYQHILNGETTRALFQNVAMIV HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH TAVIWVIMLALFFYARAMKAKGVLR HHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TEVGKTPWHLWVVGVLAVLVNAFPVVDFTLTNVENEFWLSPLTSDQRVFILGAPLWADV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHECCCCCHHCCCCCCCCCEEEEEECHHHHHH CWALGGFGAFIGSVLLLLRSRHAVTAYIVSIAGLAGSTLYQHILNGETTRALFQNVAMIV HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH TAVIWVIMLALFFYARAMKAKGVLR HHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA