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The map label for this gene is trbC [H]

Identifier: 222109221

GI number: 222109221

Start: 126301

End: 126666

Strand: Reverse

Name: trbC [H]

Synonym: Avi_9659

Alternate gene names: 222109221

Gene position: 126666-126301 (Counterclockwise)

Preceding gene: 222109222

Following gene: 222109220

Centisome position: 97.11

GC content: 63.39

Gene sequence:

>366_bases
ATGTCGCGTAGAATGTTTACGTTGGTCGCCCTTGCGGCCATCTCGATGATGATGGCCGAACCGGCCTTTGCTGCCGGGGG
AGGGGGTGGTCTGCCCTGGGAGGGACCGCTTCAACAGATCCAGCAGTCCATCACCGGCCCCGTCGCCATGGCAATCGCCC
TGATCGCAGTCGCGGTCGCAGGTGGCATGCTCATCTTTGGTGGCGAGATCAACGACTTCGCGCGTCGTCTCGCCTACGTC
GTTCTTGTCTGCGGTATCCTTCTTGGCGCGACACAGGTTGTCGGCCTGTTCGGCGGGGGAGGGGCGTCGATTGGCGTTCC
TCTCGAGGCAACGCAGGACGTGACGCTGGACAGGGCGCATGGCTGA

Upstream 100 bases:

>100_bases
GGCGCATCGTGCGCGAGATACTCAGGGTCGATGGGTTCCGGAACGGCACTTATCAAATCACCCCGGTTGGTAACCAACTC
TGACAAACAGGGAAAACTTC

Downstream 100 bases:

>100_bases
AGGGACGAGCCGTCTGGACAGGGTGCGAATTCATCGAGCTCTCTCACGGCCGGCCCTGCTGTTCGGGGCTGACCGCGAGC
TGGTCCTGATGACCGGGCTG

Product: conjugal transfer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MSRRMFTLVALAAISMMMAEPAFAAGGGGGLPWEGPLQQIQQSITGPVAMAIALIAVAVAGGMLIFGGEINDFARRLAYV
VLVCGILLGATQVVGLFGGGGASIGVPLEATQDVTLDRAHG

Sequences:

>Translated_121_residues
MSRRMFTLVALAAISMMMAEPAFAAGGGGGLPWEGPLQQIQQSITGPVAMAIALIAVAVAGGMLIFGGEINDFARRLAYV
VLVCGILLGATQVVGLFGGGGASIGVPLEATQDVTLDRAHG
>Mature_120_residues
SRRMFTLVALAAISMMMAEPAFAAGGGGGLPWEGPLQQIQQSITGPVAMAIALIAVAVAGGMLIFGGEINDFARRLAYVV
LVCGILLGATQVVGLFGGGGASIGVPLEATQDVTLDRAHG

Specific function: Unknown

COG id: COG3838

COG function: function code U; Type IV secretory pathway, VirB2 components (pilins)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007039 [H]

Pfam domain/function: PF04956 TrbC [H]

EC number: NA

Molecular weight: Translated: 12199; Mature: 12067

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRMFTLVALAAISMMMAEPAFAAGGGGGLPWEGPLQQIQQSITGPVAMAIALIAVAVA
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
GGMLIFGGEINDFARRLAYVVLVCGILLGATQVVGLFGGGGASIGVPLEATQDVTLDRAH
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
G
C
>Mature Secondary Structure 
SRRMFTLVALAAISMMMAEPAFAAGGGGGLPWEGPLQQIQQSITGPVAMAIALIAVAVA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
GGMLIFGGEINDFARRLAYVVLVCGILLGATQVVGLFGGGGASIGVPLEATQDVTLDRAH
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]