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The map label for this gene is trbB [H]

Identifier: 222109222

GI number: 222109222

Start: 126684

End: 127646

Strand: Reverse

Name: trbB [H]

Synonym: Avi_9661

Alternate gene names: 222109222

Gene position: 127646-126684 (Counterclockwise)

Preceding gene: NA

Following gene: 222109221

Centisome position: 97.86

GC content: 58.46

Gene sequence:

>963_bases
GTGCATCCAAGTCGCTCTGGTGAATCCGAAAGGCGGTTGATCGCCAATCTCCGAGACGCCCTTGGCGATGTCATTGTTGC
GGCCCTGAATGACTTGGCTGTGGTCGAGGTCATGCTCAATCCGGACGGCAAGTTGTTTGTCGAGCGTATCGGAGAAGGCA
TCAGACCTGCCGGGGACATGAATGCCCATGACGCAGAGGCCGTGATTGGCCGCGTGGCCCACGCACTCAGCACCGAGATC
AACCGCGAGCGACCCATCATCTCGGGCGAACTTCCGCTTGGAGGACATCGGTTTGAGGGACTTTTACCACCCGCCGCGCC
GGCGCCGATGTTCACCATCCGCAAGCGAGCATCGGTCCTGATATCGCTCGATCGCTATGTGGAGGATGGCATTCTCACCA
CGGCGCAGGTCGCCGTCATCCGAGACGCCATTGTCCAGCGTCTGAACATCGTGGTCTCTGGTGGCACGGGGACCGGCAAG
ACCACACTGACGAACGCAATTCTTCGCGAATTTGTCGATGTTACGCCCGAACATCGTTTAGTCATCCTCGAAGACACGGC
CGAGATCCAGTGCGCGGCGAAGAACTACGTTATCCTGCACACCACTGATACCGTCGATATGAACCGCCTCTTGAAGTCGA
CAATGCGCTTGCGGCCGGATCGCATCATCGTTGGCGAGGTTCGTGATGGTGCAGCACTTACGCTCCTCAAAGCATGGAAC
ACCGGACATCCGGGCGGTATCGCGACGGTACATGCGAACAATGCCAAAGCCGCCCTTACCCGTCTCGAACAGCTCGTCGC
GGAAGTGAGTTCCCAGCCTATGCCCGAAGTCATCGGGGAAGCGGTCGATCTGATCGTCTCCATTGAACGCACCCCCAAAG
GGCGCATCGTGCGCGAGATACTCAGGGTCGATGGGTTCCGGAACGGCACTTATCAAATCACCCCGGTTGGTAACCAACTC
TGA

Upstream 100 bases:

>100_bases
TCGTCTAATCCGGGAACATTAGTTCTCTCCGGTTGTGCTCGTAAGAGTTCCCTGTGCTGTTTGATTGTTTACAACGGTGC
AGGGCGCGAAAGGTGGGTCC

Downstream 100 bases:

>100_bases
CAAACAGGGAAAACTTCATGTCGCGTAGAATGTTTACGTTGGTCGCCCTTGCGGCCATCTCGATGATGATGGCCGAACCG
GCCTTTGCTGCCGGGGGAGG

Product: conjugal transfer protein TrbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MHPSRSGESERRLIANLRDALGDVIVAALNDLAVVEVMLNPDGKLFVERIGEGIRPAGDMNAHDAEAVIGRVAHALSTEI
NRERPIISGELPLGGHRFEGLLPPAAPAPMFTIRKRASVLISLDRYVEDGILTTAQVAVIRDAIVQRLNIVVSGGTGTGK
TTLTNAILREFVDVTPEHRLVILEDTAEIQCAAKNYVILHTTDTVDMNRLLKSTMRLRPDRIIVGEVRDGAALTLLKAWN
TGHPGGIATVHANNAKAALTRLEQLVAEVSSQPMPEVIGEAVDLIVSIERTPKGRIVREILRVDGFRNGTYQITPVGNQL

Sequences:

>Translated_320_residues
MHPSRSGESERRLIANLRDALGDVIVAALNDLAVVEVMLNPDGKLFVERIGEGIRPAGDMNAHDAEAVIGRVAHALSTEI
NRERPIISGELPLGGHRFEGLLPPAAPAPMFTIRKRASVLISLDRYVEDGILTTAQVAVIRDAIVQRLNIVVSGGTGTGK
TTLTNAILREFVDVTPEHRLVILEDTAEIQCAAKNYVILHTTDTVDMNRLLKSTMRLRPDRIIVGEVRDGAALTLLKAWN
TGHPGGIATVHANNAKAALTRLEQLVAEVSSQPMPEVIGEAVDLIVSIERTPKGRIVREILRVDGFRNGTYQITPVGNQL
>Mature_320_residues
MHPSRSGESERRLIANLRDALGDVIVAALNDLAVVEVMLNPDGKLFVERIGEGIRPAGDMNAHDAEAVIGRVAHALSTEI
NRERPIISGELPLGGHRFEGLLPPAAPAPMFTIRKRASVLISLDRYVEDGILTTAQVAVIRDAIVQRLNIVVSGGTGTGK
TTLTNAILREFVDVTPEHRLVILEDTAEIQCAAKNYVILHTTDTVDMNRLLKSTMRLRPDRIIVGEVRDGAALTLLKAWN
TGHPGGIATVHANNAKAALTRLEQLVAEVSSQPMPEVIGEAVDLIVSIERTPKGRIVREILRVDGFRNGTYQITPVGNQL

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 34683; Mature: 34683

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPSRSGESERRLIANLRDALGDVIVAALNDLAVVEVMLNPDGKLFVERIGEGIRPAGDM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHCCCCCCCCCC
NAHDAEAVIGRVAHALSTEINRERPIISGELPLGGHRFEGLLPPAAPAPMFTIRKRASVL
CCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHE
ISLDRYVEDGILTTAQVAVIRDAIVQRLNIVVSGGTGTGKTTLTNAILREFVDVTPEHRL
EEHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE
VILEDTAEIQCAAKNYVILHTTDTVDMNRLLKSTMRLRPDRIIVGEVRDGAALTLLKAWN
EEEECCCCEEEECCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
TGHPGGIATVHANNAKAALTRLEQLVAEVSSQPMPEVIGEAVDLIVSIERTPKGRIVREI
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCHHHHHHH
LRVDGFRNGTYQITPVGNQL
HHHCCCCCCCEEEEECCCCC
>Mature Secondary Structure
MHPSRSGESERRLIANLRDALGDVIVAALNDLAVVEVMLNPDGKLFVERIGEGIRPAGDM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHCCCCCCCCCC
NAHDAEAVIGRVAHALSTEINRERPIISGELPLGGHRFEGLLPPAAPAPMFTIRKRASVL
CCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHE
ISLDRYVEDGILTTAQVAVIRDAIVQRLNIVVSGGTGTGKTTLTNAILREFVDVTPEHRL
EEHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE
VILEDTAEIQCAAKNYVILHTTDTVDMNRLLKSTMRLRPDRIIVGEVRDGAALTLLKAWN
EEEECCCCEEEECCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
TGHPGGIATVHANNAKAALTRLEQLVAEVSSQPMPEVIGEAVDLIVSIERTPKGRIVREI
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCHHHHHHH
LRVDGFRNGTYQITPVGNQL
HHHCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]