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The map label for this gene is trbE [H]

Identifier: 222109219

GI number: 222109219

Start: 123567

End: 125630

Strand: Reverse

Name: trbE [H]

Synonym: Avi_9656

Alternate gene names: 222109219

Gene position: 125630-123567 (Counterclockwise)

Preceding gene: 222109220

Following gene: 222109218

Centisome position: 96.32

GC content: 58.33

Gene sequence:

>2064_bases
CTGACCTACCGTGAACCGGACACACGCAAATCCGGACTGGTCAAATACGTCTATGCGGACCCCGCATCTCGCGCCACGAG
CAATGCCGATCGCATCCTTGAACATTTCAAAACCTCGATCCGCGAGTTCGAGCAGTACATGCAGAACGTCGTTTCGATCC
GTCGCATGGTCACTCAGGAAGTCCCCGATCGCGGCGGCTATCGCGTAGCCAGATACGACGAACTTTTTCAGTTCGTCCGC
TTTTGCCTTGTGGGCGAAAACCATCCGGTGCGGCTCCCCGAGATCCCGATGTATCTCGACTACATGGCAACCGCCGAGTT
TCACCATGGTCTGTCGCCCATGGTCGATGGCCGATTCTGCCAAATCGTGGCGATCGACGGCTTTCCAGCCGAAAGCTGGC
CGGGGATTTTGAACGTTCTCGATCTTATGCCGCTGACCTACCGGTGGTCCTCGCGCTTCATGTTCATGGACGAGATCGAG
GCGACCCAGCGGCTGGAGCGAACCCGCAAGAAGTGGATCCAGAAAGTACGCCCCTTCACCGACCAGTTGTTCAAGACGAA
TAGCGGTTCGGTGAACCAGGACGCGCTTCTAATGGTCGGCGAGGCCGAGGACGCGATTGCTGCGGCAAATTCCCGGCTGG
TTGCTTACGGCTACTACACACCGGTCATCGTCATGTTCGGTGAGGATGATGCCAAGCTGCGCCGCCAGGCCGAAAGCGTC
CGCCGCCTCATCCAGTCGGAAGGCTTCGGCGCCCGCATCGAAAGCCTGAACGCGACAGAGGCATTCTTGGGCAGTCTGCC
GGGGAACTGGTATGCCAACATCCGCGAACCGCTGATCCACACGCGCAATCTGGCGGATATGATACCGCTGAATTCGGTGT
GGTCCGGAGAGCCGGTCAATCCAAATCCCTTCTATCCGGAAAATTCTCCGCCGCTTATGCTGGTGGCTTCCGGCTCGACG
CCATTCCGGCTCAACCTGCATGTTGGCGACCTCGGACACACATTGATCTTCGGGCCGACCGGTTCGGGCAAATCGACACT
GTTGGCGCTGATCGCAGCACAATTCCGGCGCTATCAGAACAGCCAGCTTTTCGCCTTCGACAAGGGCCGGTCTATGTATC
CGCTCACGCGAGCCGTCGGTGGCGATTTCTATGATGTGGGCGCAAGCGAGAACCTTGCATTCTGCCCCTTACAGGATCTC
GATACGGACGCCGACAAAGCATGGGCGGCGGAATGGCTCGAAACGCTCATCATCATGTCTGGCGAGACGGTGACGCCTGA
CCATCGCAATGCAATCGCGCATCAGCTCGACCTTATGTCGAAGTCGGAACGCCGCTCGATTTCCGATTTCGTGTCGGGCG
TGCAGAAGAAGTCAATCAAGGAGGCGCTGCGCCACTACACGGTCGACGGTCCCATGGGCCATTTGCTCGACGCGGAACAG
GACAACCTCAAGCTCTCCAATTTCCAGACCTTCGAAGTCGATGAACTCATGAACATGGGCGAGCGCAACCTTGTCCCGGT
TCTGCTCTATCTGTTCCGGCGCATCGAAAAGCGCCTGACCGGCGCGCCCAGCCTTATCATTCTCGATGAAGCATGGATCA
TGCTCGGTCACCCTGCGTTCCGCGACAAGATCCGCGAATGGCTGAAAACCCTTCGTCGCGCAAATTGCGCGGTCGTGCTT
GCCACGCAGTCGATCTCGGACGCGGACAAATCCGGCATCATGGACGTTCTCAAGGAATCCTGCCCGACCAAGATCTGCTT
GCCGAACGGTGCGGCTCGCGAAACCGGGACCCGCGATTTCTACGAAAAGATCGGCTTCAACGATCGCCAGATCGAAATCA
TCGCCACCGCCACGCCCAAGCGTGAATATTACGTGGTCTCCCCCGATGGCCGCCGCCTGTTCGAAATGGGCCTCGGTCCT
ATCACCCTGTCCTTCGTCGGCGTCTCCGGCAAGCACGATCTCCAGCGGATCAGCGAACTTTACGACCACCACGGGGATGA
GTGGCCGCGCCACTGGCTTCAATCAAGAGGAATCGAAAATGCTGCGTCGCTCTTTGCTTCGTAA

Upstream 100 bases:

>100_bases
TTCCCATTTCCCTGACCGGGTAAGCCAGCTTATCGATGATGAGCGGCGTCAGCGGTTTGAAACGACTGAAGGCCATTTTG
AGAGCCAGCACGCCGTCATC

Downstream 100 bases:

>100_bases
TGCCCTTGCCGGTTTGGTCCTCGCCGTCAGCCCAAGCGTCGTCTTCGCCGGCGCTGCAACGGGTGGGGCGACGGAATGGA
CCCAGCTTCTCAACAATGCC

Product: conjugal transfer protein TrbE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 687; Mature: 686

Protein sequence:

>687_residues
MTYREPDTRKSGLVKYVYADPASRATSNADRILEHFKTSIREFEQYMQNVVSIRRMVTQEVPDRGGYRVARYDELFQFVR
FCLVGENHPVRLPEIPMYLDYMATAEFHHGLSPMVDGRFCQIVAIDGFPAESWPGILNVLDLMPLTYRWSSRFMFMDEIE
ATQRLERTRKKWIQKVRPFTDQLFKTNSGSVNQDALLMVGEAEDAIAAANSRLVAYGYYTPVIVMFGEDDAKLRRQAESV
RRLIQSEGFGARIESLNATEAFLGSLPGNWYANIREPLIHTRNLADMIPLNSVWSGEPVNPNPFYPENSPPLMLVASGST
PFRLNLHVGDLGHTLIFGPTGSGKSTLLALIAAQFRRYQNSQLFAFDKGRSMYPLTRAVGGDFYDVGASENLAFCPLQDL
DTDADKAWAAEWLETLIIMSGETVTPDHRNAIAHQLDLMSKSERRSISDFVSGVQKKSIKEALRHYTVDGPMGHLLDAEQ
DNLKLSNFQTFEVDELMNMGERNLVPVLLYLFRRIEKRLTGAPSLIILDEAWIMLGHPAFRDKIREWLKTLRRANCAVVL
ATQSISDADKSGIMDVLKESCPTKICLPNGAARETGTRDFYEKIGFNDRQIEIIATATPKREYYVVSPDGRRLFEMGLGP
ITLSFVGVSGKHDLQRISELYDHHGDEWPRHWLQSRGIENAASLFAS

Sequences:

>Translated_687_residues
MTYREPDTRKSGLVKYVYADPASRATSNADRILEHFKTSIREFEQYMQNVVSIRRMVTQEVPDRGGYRVARYDELFQFVR
FCLVGENHPVRLPEIPMYLDYMATAEFHHGLSPMVDGRFCQIVAIDGFPAESWPGILNVLDLMPLTYRWSSRFMFMDEIE
ATQRLERTRKKWIQKVRPFTDQLFKTNSGSVNQDALLMVGEAEDAIAAANSRLVAYGYYTPVIVMFGEDDAKLRRQAESV
RRLIQSEGFGARIESLNATEAFLGSLPGNWYANIREPLIHTRNLADMIPLNSVWSGEPVNPNPFYPENSPPLMLVASGST
PFRLNLHVGDLGHTLIFGPTGSGKSTLLALIAAQFRRYQNSQLFAFDKGRSMYPLTRAVGGDFYDVGASENLAFCPLQDL
DTDADKAWAAEWLETLIIMSGETVTPDHRNAIAHQLDLMSKSERRSISDFVSGVQKKSIKEALRHYTVDGPMGHLLDAEQ
DNLKLSNFQTFEVDELMNMGERNLVPVLLYLFRRIEKRLTGAPSLIILDEAWIMLGHPAFRDKIREWLKTLRRANCAVVL
ATQSISDADKSGIMDVLKESCPTKICLPNGAARETGTRDFYEKIGFNDRQIEIIATATPKREYYVVSPDGRRLFEMGLGP
ITLSFVGVSGKHDLQRISELYDHHGDEWPRHWLQSRGIENAASLFAS
>Mature_686_residues
TYREPDTRKSGLVKYVYADPASRATSNADRILEHFKTSIREFEQYMQNVVSIRRMVTQEVPDRGGYRVARYDELFQFVRF
CLVGENHPVRLPEIPMYLDYMATAEFHHGLSPMVDGRFCQIVAIDGFPAESWPGILNVLDLMPLTYRWSSRFMFMDEIEA
TQRLERTRKKWIQKVRPFTDQLFKTNSGSVNQDALLMVGEAEDAIAAANSRLVAYGYYTPVIVMFGEDDAKLRRQAESVR
RLIQSEGFGARIESLNATEAFLGSLPGNWYANIREPLIHTRNLADMIPLNSVWSGEPVNPNPFYPENSPPLMLVASGSTP
FRLNLHVGDLGHTLIFGPTGSGKSTLLALIAAQFRRYQNSQLFAFDKGRSMYPLTRAVGGDFYDVGASENLAFCPLQDLD
TDADKAWAAEWLETLIIMSGETVTPDHRNAIAHQLDLMSKSERRSISDFVSGVQKKSIKEALRHYTVDGPMGHLLDAEQD
NLKLSNFQTFEVDELMNMGERNLVPVLLYLFRRIEKRLTGAPSLIILDEAWIMLGHPAFRDKIREWLKTLRRANCAVVLA
TQSISDADKSGIMDVLKESCPTKICLPNGAARETGTRDFYEKIGFNDRQIEIIATATPKREYYVVSPDGRRLFEMGLGPI
TLSFVGVSGKHDLQRISELYDHHGDEWPRHWLQSRGIENAASLFAS

Specific function: Required For The Assembly Of Mature F-Pilin Subunits Into Extended F Pili. [C]

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbE/virB4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004346
- InterPro:   IPR018145 [H]

Pfam domain/function: PF03135 CagE_TrbE_VirB [H]

EC number: NA

Molecular weight: Translated: 77836; Mature: 77704

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYREPDTRKSGLVKYVYADPASRATSNADRILEHFKTSIREFEQYMQNVVSIRRMVTQE
CCCCCCCCCCCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPDRGGYRVARYDELFQFVRFCLVGENHPVRLPEIPMYLDYMATAEFHHGLSPMVDGRFC
CCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEE
QIVAIDGFPAESWPGILNVLDLMPLTYRWSSRFMFMDEIEATQRLERTRKKWIQKVRPFT
EEEEECCCCCCCCCHHHHHHHHCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHH
DQLFKTNSGSVNQDALLMVGEAEDAIAAANSRLVAYGYYTPVIVMFGEDDAKLRRQAESV
HHHHCCCCCCCCCCEEEEEECCHHHHHHCCCCEEEEEECCEEEEEECCCHHHHHHHHHHH
RRLIQSEGFGARIESLNATEAFLGSLPGNWYANIREPLIHTRNLADMIPLNSVWSGEPVN
HHHHHCCCCCCCHHCCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCC
PNPFYPENSPPLMLVASGSTPFRLNLHVGDLGHTLIFGPTGSGKSTLLALIAAQFRRYQN
CCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
SQLFAFDKGRSMYPLTRAVGGDFYDVGASENLAFCPLQDLDTDADKAWAAEWLETLIIMS
CEEEEECCCCCCCCHHHHHCCCEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHC
GETVTPDHRNAIAHQLDLMSKSERRSISDFVSGVQKKSIKEALRHYTVDGPMGHLLDAEQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCC
DNLKLSNFQTFEVDELMNMGERNLVPVLLYLFRRIEKRLTGAPSLIILDEAWIMLGHPAF
CCEEECCCCEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEECCHHH
RDKIREWLKTLRRANCAVVLATQSISDADKSGIMDVLKESCPTKICLPNGAARETGTRDF
HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHH
YEKIGFNDRQIEIIATATPKREYYVVSPDGRRLFEMGLGPITLSFVGVSGKHDLQRISEL
HHHCCCCCCEEEEEEECCCCCCEEEECCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHH
YDHHGDEWPRHWLQSRGIENAASLFAS
HHCCCCHHHHHHHHHCCCCHHHHHHCC
>Mature Secondary Structure 
TYREPDTRKSGLVKYVYADPASRATSNADRILEHFKTSIREFEQYMQNVVSIRRMVTQE
CCCCCCCCCCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPDRGGYRVARYDELFQFVRFCLVGENHPVRLPEIPMYLDYMATAEFHHGLSPMVDGRFC
CCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEE
QIVAIDGFPAESWPGILNVLDLMPLTYRWSSRFMFMDEIEATQRLERTRKKWIQKVRPFT
EEEEECCCCCCCCCHHHHHHHHCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHH
DQLFKTNSGSVNQDALLMVGEAEDAIAAANSRLVAYGYYTPVIVMFGEDDAKLRRQAESV
HHHHCCCCCCCCCCEEEEEECCHHHHHHCCCCEEEEEECCEEEEEECCCHHHHHHHHHHH
RRLIQSEGFGARIESLNATEAFLGSLPGNWYANIREPLIHTRNLADMIPLNSVWSGEPVN
HHHHHCCCCCCCHHCCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCC
PNPFYPENSPPLMLVASGSTPFRLNLHVGDLGHTLIFGPTGSGKSTLLALIAAQFRRYQN
CCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
SQLFAFDKGRSMYPLTRAVGGDFYDVGASENLAFCPLQDLDTDADKAWAAEWLETLIIMS
CEEEEECCCCCCCCHHHHHCCCEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHC
GETVTPDHRNAIAHQLDLMSKSERRSISDFVSGVQKKSIKEALRHYTVDGPMGHLLDAEQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCC
DNLKLSNFQTFEVDELMNMGERNLVPVLLYLFRRIEKRLTGAPSLIILDEAWIMLGHPAF
CCEEECCCCEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEECCHHH
RDKIREWLKTLRRANCAVVLATQSISDADKSGIMDVLKESCPTKICLPNGAARETGTRDF
HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHH
YEKIGFNDRQIEIIATATPKREYYVVSPDGRRLFEMGLGPITLSFVGVSGKHDLQRISEL
HHHCCCCCCEEEEEEECCCCCCEEEECCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHH
YDHHGDEWPRHWLQSRGIENAASLFAS
HHCCCCHHHHHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]