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The map label for this gene is traB [H]

Identifier: 222109182

GI number: 222109182

Start: 69985

End: 71127

Strand: Direct

Name: traB [H]

Synonym: Avi_9597

Alternate gene names: 222109182

Gene position: 69985-71127 (Clockwise)

Preceding gene: 222109181

Following gene: 222109183

Centisome position: 53.66

GC content: 62.12

Gene sequence:

>1143_bases
CTGGCGATCAACGCGGCGTTCGTCGCCGGCGGCTGCATTACCGGCGCGGCGGGCTGGAGCGGTCATGCGCTCACGCTTCC
GATCGGCATCGCCTTTCCGGCCCTCTGGGCATTCGCCCCCTCCCGGATCGTGGCAGCGCTCGTGGCGGCGGCCTATTTCC
TGGGAGCCTCGCGCGGCCTGCCGGTCGGAACATCGATCTTCTTTGGCGAGCAGCTCGCCATCGGCATTTCGTTCTGGCTC
GCCGCCTCGATCCTCTTCGTCATCGTTCATGCCGCCCTGTGGGCGTCAAAGGGCGGGCGGCATCGCCCGCTGCGCTACGC
GGTCGCCGCCGTTATGATGAGTGTGCCGCCGTTCGGAATTACGGGCTGGGCTAGCCCGATTACGGCGGCCGGCGTGCTGT
TTCCCGGTTGGGGCTGGTACGGTCTGACTGCGATGGCGGTCGGCCTGGTCATCATGACCACGAAGTATTGGCCGACCGCA
GCGCTTGTCCTGGGAGGATTTTACGCCTGGTCCGCTACATCGTGGACCGCGCCTACAGTGCCTGATCGCTTGGCAGGGAT
CAACACGCAGTTCAAGTTTACCACAGCCGGCCAATATGCCGACTACGCGCAGCATCTTGAGACGATCGCAATGGTCAGGC
AGGCCGTGGGGCAGGGCGCGTCGGTCGTTGTCCTGCCCGAGAGCGCCTTCGGTCTCTGGAGCCACACCACAGAGAGCCTG
TGGCAAGGCGAGCTCACCGGTCTTGATGTCCGGATCATTGGCGGTGCGGCCGTCGTCGATCCCACCGGCTACGACAATAC
GATGATCGAACTGACACCGAAAACATCGCAAATTCTCTATAGTCAACGAATGCCGGTCCCGGTTTCGATGTGGCAGCCAT
GGGCAACAGGTGGCGCGGACGCTCAGTTCTTCGGCAATCCGTATGTGATTATTGAGGGGAAGCGGGCAGCGCCACTTATC
TGCTACGAGCTGCTTTTGGTCTGGCCTGTACTGCAATCCATGATGTACGAACCTGATATGATTGTGGCGGTCGGCAATGG
CTGGTGGACGGGCGGCTCCAACATCGTTTCCATCCTGAAAGCAAGCGGAGAGGCATGGGCCTCGCTCTTCGGCCTTCCAC
TCGTGATGGCGTTCAACATGTAA

Upstream 100 bases:

>100_bases
TCATATGACTCGAGATACTTTGGCCCACTCCCGGCCGACGGCGTCCTTGGCCTCGCGCGAGAAATTCTCACGTTCTCTCC
GTAATCTCACGCCCCGCAAT

Downstream 100 bases:

>100_bases
GGAGGATAGCCTCTGTGCTTGTCGAGTTTTGGATTGTATTCATTATCGTTCAACTTGAAAAGCTGCGCGCCTTCGATCCG
CGTGTGGGCTGGCTGCTTGC

Product: conjugal transfer protein TraB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MAINAAFVAGGCITGAAGWSGHALTLPIGIAFPALWAFAPSRIVAALVAAAYFLGASRGLPVGTSIFFGEQLAIGISFWL
AASILFVIVHAALWASKGGRHRPLRYAVAAVMMSVPPFGITGWASPITAAGVLFPGWGWYGLTAMAVGLVIMTTKYWPTA
ALVLGGFYAWSATSWTAPTVPDRLAGINTQFKFTTAGQYADYAQHLETIAMVRQAVGQGASVVVLPESAFGLWSHTTESL
WQGELTGLDVRIIGGAAVVDPTGYDNTMIELTPKTSQILYSQRMPVPVSMWQPWATGGADAQFFGNPYVIIEGKRAAPLI
CYELLLVWPVLQSMMYEPDMIVAVGNGWWTGGSNIVSILKASGEAWASLFGLPLVMAFNM

Sequences:

>Translated_380_residues
MAINAAFVAGGCITGAAGWSGHALTLPIGIAFPALWAFAPSRIVAALVAAAYFLGASRGLPVGTSIFFGEQLAIGISFWL
AASILFVIVHAALWASKGGRHRPLRYAVAAVMMSVPPFGITGWASPITAAGVLFPGWGWYGLTAMAVGLVIMTTKYWPTA
ALVLGGFYAWSATSWTAPTVPDRLAGINTQFKFTTAGQYADYAQHLETIAMVRQAVGQGASVVVLPESAFGLWSHTTESL
WQGELTGLDVRIIGGAAVVDPTGYDNTMIELTPKTSQILYSQRMPVPVSMWQPWATGGADAQFFGNPYVIIEGKRAAPLI
CYELLLVWPVLQSMMYEPDMIVAVGNGWWTGGSNIVSILKASGEAWASLFGLPLVMAFNM
>Mature_379_residues
AINAAFVAGGCITGAAGWSGHALTLPIGIAFPALWAFAPSRIVAALVAAAYFLGASRGLPVGTSIFFGEQLAIGISFWLA
ASILFVIVHAALWASKGGRHRPLRYAVAAVMMSVPPFGITGWASPITAAGVLFPGWGWYGLTAMAVGLVIMTTKYWPTAA
LVLGGFYAWSATSWTAPTVPDRLAGINTQFKFTTAGQYADYAQHLETIAMVRQAVGQGASVVVLPESAFGLWSHTTESLW
QGELTGLDVRIIGGAAVVDPTGYDNTMIELTPKTSQILYSQRMPVPVSMWQPWATGGADAQFFGNPYVIIEGKRAAPLIC
YELLLVWPVLQSMMYEPDMIVAVGNGWWTGGSNIVSILKASGEAWASLFGLPLVMAFNM

Specific function: Enhances conjugal transfer of the Ti plasmid [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016707
- InterPro:   IPR003010 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: NA

Molecular weight: Translated: 40360; Mature: 40229

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINAAFVAGGCITGAAGWSGHALTLPIGIAFPALWAFAPSRIVAALVAAAYFLGASRGL
CCCCEEEEECCCEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PVGTSIFFGEQLAIGISFWLAASILFVIVHAALWASKGGRHRPLRYAVAAVMMSVPPFGI
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
TGWASPITAAGVLFPGWGWYGLTAMAVGLVIMTTKYWPTAALVLGGFYAWSATSWTAPTV
CCCCCCHHHCCEECCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCCCCCCC
PDRLAGINTQFKFTTAGQYADYAQHLETIAMVRQAVGQGASVVVLPESAFGLWSHTTESL
CHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
WQGELTGLDVRIIGGAAVVDPTGYDNTMIELTPKTSQILYSQRMPVPVSMWQPWATGGAD
HCCCCCCEEEEEECCEEEECCCCCCCCEEEECCCHHHHHHHCCCCCCHHCCCCCCCCCCC
AQFFGNPYVIIEGKRAAPLICYELLLVWPVLQSMMYEPDMIVAVGNGWWTGGSNIVSILK
CEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCHHHHHHHH
ASGEAWASLFGLPLVMAFNM
CCCHHHHHHHCCHHHHEECC
>Mature Secondary Structure 
AINAAFVAGGCITGAAGWSGHALTLPIGIAFPALWAFAPSRIVAALVAAAYFLGASRGL
CCCEEEEECCCEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PVGTSIFFGEQLAIGISFWLAASILFVIVHAALWASKGGRHRPLRYAVAAVMMSVPPFGI
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
TGWASPITAAGVLFPGWGWYGLTAMAVGLVIMTTKYWPTAALVLGGFYAWSATSWTAPTV
CCCCCCHHHCCEECCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCCCCCCC
PDRLAGINTQFKFTTAGQYADYAQHLETIAMVRQAVGQGASVVVLPESAFGLWSHTTESL
CHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
WQGELTGLDVRIIGGAAVVDPTGYDNTMIELTPKTSQILYSQRMPVPVSMWQPWATGGAD
HCCCCCCEEEEEECCEEEECCCCCCCCEEEECCCHHHHHHHCCCCCCHHCCCCCCCCCCC
AQFFGNPYVIIEGKRAAPLICYELLLVWPVLQSMMYEPDMIVAVGNGWWTGGSNIVSILK
CEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCHHHHHHHH
ASGEAWASLFGLPLVMAFNM
CCCHHHHHHHCCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8763953; 11743193; 11743194 [H]