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The map label for this gene is traF [H]

Identifier: 222109181

GI number: 222109181

Start: 69435

End: 69968

Strand: Direct

Name: traF [H]

Synonym: Avi_9596

Alternate gene names: 222109181

Gene position: 69435-69968 (Clockwise)

Preceding gene: 222109180

Following gene: 222109182

Centisome position: 53.23

GC content: 58.43

Gene sequence:

>534_bases
TTGAGCGCCCGCCGCAACGCCCTCGCTATCCTTGGCGTCGGGGCCGTATTGATCGGCGGTATCGCCGGCACATTTGCGAT
TGGTGGTTACCGCATCAATTTTACGCCGTCATATAACCTTGGCCTATGGCAGATCGGCGCTCTGGATCGAGAGGTTCGGC
CAGGGGATCGAATATTTATCTGCCCACTCGCTGGCGCAGCCGTGTCGCTGGCACTTGAACGTCACTATCTCCCGCGAGGG
CTATGCCCTTCAGGTAGCGGTCCGCTCATCAAAACCGTGGCGGCGACTGCAGGTCAGTCGGTCGAAATTGGCGGCCAGGT
CATCATCGATGGCAAACCGCTTCATTCATCGCGCGTCCTCAAGGCTGACGCAGAAGGACGGCCCATGCCGGTCTATGCCG
GCGGCACCATTCCCGAGGGCAAGATTTTTCTACATTCCGAATTTGTTGGTTCATATGACTCGAGATACTTTGGCCCACTC
CCGGCCGACGGCGTCCTTGGCCTCGCGCGAGAAATTCTCACGTTCTCTCCGTAA

Upstream 100 bases:

>100_bases
CCTGGCCACTGTTCAACGCCGCGCAGAAGGTGGCCGCTCACCAAAAGGAGCAGGCACAGGCGCAGGCGAGAACGCAGGTG
CAAAAGGCGGGGATGACCCG

Downstream 100 bases:

>100_bases
TCTCACGCCCCGCAATCTGGCGATCAACGCGGCGTTCGTCGCCGGCGGCTGCATTACCGGCGCGGCGGGCTGGAGCGGTC
ATGCGCTCACGCTTCCGATC

Product: conjugal transfer pilin processing protease TraF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MSARRNALAILGVGAVLIGGIAGTFAIGGYRINFTPSYNLGLWQIGALDREVRPGDRIFICPLAGAAVSLALERHYLPRG
LCPSGSGPLIKTVAATAGQSVEIGGQVIIDGKPLHSSRVLKADAEGRPMPVYAGGTIPEGKIFLHSEFVGSYDSRYFGPL
PADGVLGLAREILTFSP

Sequences:

>Translated_177_residues
MSARRNALAILGVGAVLIGGIAGTFAIGGYRINFTPSYNLGLWQIGALDREVRPGDRIFICPLAGAAVSLALERHYLPRG
LCPSGSGPLIKTVAATAGQSVEIGGQVIIDGKPLHSSRVLKADAEGRPMPVYAGGTIPEGKIFLHSEFVGSYDSRYFGPL
PADGVLGLAREILTFSP
>Mature_176_residues
SARRNALAILGVGAVLIGGIAGTFAIGGYRINFTPSYNLGLWQIGALDREVRPGDRIFICPLAGAAVSLALERHYLPRGL
CPSGSGPLIKTVAATAGQSVEIGGQVIIDGKPLHSSRVLKADAEGRPMPVYAGGTIPEGKIFLHSEFVGSYDSRYFGPLP
ADGVLGLAREILTFSP

Specific function: Involved in conjugal transfer of the plasmid (Potential) [H]

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S26C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015927
- InterPro:   IPR011056
- InterPro:   IPR019533
- InterPro:   IPR014139 [H]

Pfam domain/function: PF10502 Peptidase_S26 [H]

EC number: NA

Molecular weight: Translated: 18488; Mature: 18356

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARRNALAILGVGAVLIGGIAGTFAIGGYRINFTPSYNLGLWQIGALDREVRPGDRIFI
CCCCCCEEEEEEHHHHHHHHHHHHEEECCEEEEECCCCCCCEEEECCCCCCCCCCCEEEE
CPLAGAAVSLALERHYLPRGLCPSGSGPLIKTVAATAGQSVEIGGQVIIDGKPLHSSRVL
EECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHCCCCEEEECCEEEECCCCCCCCEEE
KADAEGRPMPVYAGGTIPEGKIFLHSEFVGSYDSRYFGPLPADGVLGLAREILTFSP
EECCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SARRNALAILGVGAVLIGGIAGTFAIGGYRINFTPSYNLGLWQIGALDREVRPGDRIFI
CCCCCEEEEEEHHHHHHHHHHHHEEECCEEEEECCCCCCCEEEECCCCCCCCCCCEEEE
CPLAGAAVSLALERHYLPRGLCPSGSGPLIKTVAATAGQSVEIGGQVIIDGKPLHSSRVL
EECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHCCCCEEEECCEEEECCCCCCCCEEE
KADAEGRPMPVYAGGTIPEGKIFLHSEFVGSYDSRYFGPLPADGVLGLAREILTFSP
EECCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]