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The map label for this gene is cspE [C]

Identifier: 222109154

GI number: 222109154

Start: 45642

End: 45941

Strand: Direct

Name: cspE [C]

Synonym: Avi_9546

Alternate gene names: 222109154

Gene position: 45642-45941 (Clockwise)

Preceding gene: 222109153

Following gene: 222109158

Centisome position: 34.99

GC content: 56.67

Gene sequence:

>300_bases
ATGCCAACGGGGAAACTCAAATGGTTCGATACCACCAAAGGCTACGGTTTCATCACGTCTGACGACGGTGGTCCCGATGT
CTTTCTCCATCTTAGTAAGGTGACGGAGGCCAATCTTCCAACGTTGCAGCCCGGTGTGCGGCTCCGCTACGTGCTGGGCC
GTCAGGGCAATAAGGTTTCGGCGCACGACTTGTCTTTGATGCCAGATGAAGCCGCCACTCGGTCCCCCGCACGCATGATC
GACGGCGATGCTGATTTCGAGGCAGAGTTCGAAAGAGAATGGGGACTTCGACGGGGTTAG

Upstream 100 bases:

>100_bases
GTATCCACAATGGTCAGTGGTCGAAGATCTGCTCGACGAATACGAGGCATGGGCGGCCCACCAATTGCGGACGACTCGTC
ACTAGAGAAGAGGTACGGGG

Downstream 100 bases:

>100_bases
ACATGGTTTGAAACGACCACAATCGCGTCGGACCTGTTCATCCGAACCGGGGTCGGCGGGTTGCGACCGCTGAGCGGGCC
GCTATCGAGATAGCCTGTTT

Product: CspA-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MPTGKLKWFDTTKGYGFITSDDGGPDVFLHLSKVTEANLPTLQPGVRLRYVLGRQGNKVSAHDLSLMPDEAATRSPARMI
DGDADFEAEFEREWGLRRG

Sequences:

>Translated_99_residues
MPTGKLKWFDTTKGYGFITSDDGGPDVFLHLSKVTEANLPTLQPGVRLRYVLGRQGNKVSAHDLSLMPDEAATRSPARMI
DGDADFEAEFEREWGLRRG
>Mature_98_residues
PTGKLKWFDTTKGYGFITSDDGGPDVFLHLSKVTEANLPTLQPGVRLRYVLGRQGNKVSAHDLSLMPDEAATRSPARMID
GDADFEAEFEREWGLRRG

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 11011; Mature: 10879

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTGKLKWFDTTKGYGFITSDDGGPDVFLHLSKVTEANLPTLQPGVRLRYVLGRQGNKVS
CCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEC
AHDLSLMPDEAATRSPARMIDGDADFEAEFEREWGLRRG
CCCCEECCCCCCCCCCCEECCCCCCCCEEECCCCCCCCC
>Mature Secondary Structure 
PTGKLKWFDTTKGYGFITSDDGGPDVFLHLSKVTEANLPTLQPGVRLRYVLGRQGNKVS
CCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEC
AHDLSLMPDEAATRSPARMIDGDADFEAEFEREWGLRRG
CCCCEECCCCCCCCCCCEECCCCCCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]