Definition Agrobacterium vitis S4 plasmid pAtS4b, complete sequence.
Accession NC_011991
Length 130,435

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The map label for this gene is 222109141

Identifier: 222109141

GI number: 222109141

Start: 26662

End: 27747

Strand: Direct

Name: 222109141

Synonym: Avi_9529

Alternate gene names: NA

Gene position: 26662-27747 (Clockwise)

Preceding gene: 222109140

Following gene: 222109147

Centisome position: 20.44

GC content: 52.3

Gene sequence:

>1086_bases
TTGAAACGGCCGAAAGTCAGGGCTGTTACCCCGGTCATTCAGAACAAGCCCGTTTCGTACGCCGATCGCCTCATTACACT
TTCCGGCGGACCAGCGCTGATCTGGCCATATCACAACATCTTACCGGGCGAAGGACCTTTCGAGATTGCACCTGACAGCA
ACTGCTATCGAAATCCGAATTGGGTTGAGCAACTGCCGAGCAGCATACCACGAAACAAAGTCATCGTGAACTTGTTGCCC
GCGCTAACGGAGGAGTGGTTGGCCAATGGGAAATTTCGCATCGATCCTGAACGATGGATTATGGACATTGTCGTGCACTA
CGAGGAGCGCGGTGTCTGTTTTCGCGGAAGCTATGCGGCCGATCTTGCTAAGATCCTGCGCGGAAATGCAGATGCCTTGC
GTTACAACTGGACTCTGCTGTTTTACTACGTTGCGATTATCAAAAAGCTATTAGAAAGACGCAACGTTGAAGAAGCGATG
CAGGAGCTCGTCAAGGTCAGCAAGGCCGACGTCCCGAGAGCTGGGATGATGCTGTCACTCGGCGCGTTGAGCCTCTTTTT
AAAGGCCGATCAGACGTTACACCTTCACGGAGACCCAAAGTCTGCCTACTCGTTCGTTCAGAGGTTTTTCGACTTTCAAC
CTGGCCAGAAAGGCGAGGTAAATCATTTGTCCGTCGCCTATCTCAGAAACCGGTCGCTTGACCTTGGGATGTACTACTTC
TTTCCGGCCATGACGTCGCTTGGCCAACAGCCCGTTGGCGAGACATTAATCGCAACGCATGATGCTCCGCTCCAGCGTCT
GATATTTCGAGTTTTACCATTCTTGTTTGATCCGACAGTCGCCCCCGCTGTCCCGACGTCGATCGCTGTGGATGAGTTCG
CCAATGACGATGGTCTGGCGTTCGTTGAATGGCGCTCCCGGCTAAATGAAAAATTTGAACCACCTTTCAATAAGGACCAA
AGACTTAAGCGGCTCGCCAATCTTGCAGATTACGCCAAGGGCCTCTGCGATATGAGCGACGAAAAAGATGCGCTCGATGA
GGTCTGGCGCGAATGGACGCTTCCCTATCTGGATGGTAACCCATAG

Upstream 100 bases:

>100_bases
GGCAACGACATTGACGAAACTTCTACAGAAATCCACGAAACCCAAATTGACGAATATAAAGAGCCGCGCCACCTGTCTTC
TTTGCCGGCTCATTTGGCGA

Downstream 100 bases:

>100_bases
CGACCTCGTTCGCGGCCATACTCGGGTTGTTATGGTGCCTGCATCACCCTTCACAATTAGCAGGGTGCGGAAATAGGCTC
GTTCGGGGTCGATCTGAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MKRPKVRAVTPVIQNKPVSYADRLITLSGGPALIWPYHNILPGEGPFEIAPDSNCYRNPNWVEQLPSSIPRNKVIVNLLP
ALTEEWLANGKFRIDPERWIMDIVVHYEERGVCFRGSYAADLAKILRGNADALRYNWTLLFYYVAIIKKLLERRNVEEAM
QELVKVSKADVPRAGMMLSLGALSLFLKADQTLHLHGDPKSAYSFVQRFFDFQPGQKGEVNHLSVAYLRNRSLDLGMYYF
FPAMTSLGQQPVGETLIATHDAPLQRLIFRVLPFLFDPTVAPAVPTSIAVDEFANDDGLAFVEWRSRLNEKFEPPFNKDQ
RLKRLANLADYAKGLCDMSDEKDALDEVWREWTLPYLDGNP

Sequences:

>Translated_361_residues
MKRPKVRAVTPVIQNKPVSYADRLITLSGGPALIWPYHNILPGEGPFEIAPDSNCYRNPNWVEQLPSSIPRNKVIVNLLP
ALTEEWLANGKFRIDPERWIMDIVVHYEERGVCFRGSYAADLAKILRGNADALRYNWTLLFYYVAIIKKLLERRNVEEAM
QELVKVSKADVPRAGMMLSLGALSLFLKADQTLHLHGDPKSAYSFVQRFFDFQPGQKGEVNHLSVAYLRNRSLDLGMYYF
FPAMTSLGQQPVGETLIATHDAPLQRLIFRVLPFLFDPTVAPAVPTSIAVDEFANDDGLAFVEWRSRLNEKFEPPFNKDQ
RLKRLANLADYAKGLCDMSDEKDALDEVWREWTLPYLDGNP
>Mature_361_residues
MKRPKVRAVTPVIQNKPVSYADRLITLSGGPALIWPYHNILPGEGPFEIAPDSNCYRNPNWVEQLPSSIPRNKVIVNLLP
ALTEEWLANGKFRIDPERWIMDIVVHYEERGVCFRGSYAADLAKILRGNADALRYNWTLLFYYVAIIKKLLERRNVEEAM
QELVKVSKADVPRAGMMLSLGALSLFLKADQTLHLHGDPKSAYSFVQRFFDFQPGQKGEVNHLSVAYLRNRSLDLGMYYF
FPAMTSLGQQPVGETLIATHDAPLQRLIFRVLPFLFDPTVAPAVPTSIAVDEFANDDGLAFVEWRSRLNEKFEPPFNKDQ
RLKRLANLADYAKGLCDMSDEKDALDEVWREWTLPYLDGNP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41158; Mature: 41158

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRPKVRAVTPVIQNKPVSYADRLITLSGGPALIWPYHNILPGEGPFEIAPDSNCYRNPN
CCCCCCCEECHHHHCCCCCHHCEEEEECCCCEEECCHHHCCCCCCCEEECCCCCCCCCCH
WVEQLPSSIPRNKVIVNLLPALTEEWLANGKFRIDPERWIMDIVVHYEERGVCFRGSYAA
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCEEEECCHHH
DLAKILRGNADALRYNWTLLFYYVAIIKKLLERRNVEEAMQELVKVSKADVPRAGMMLSL
HHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHH
GALSLFLKADQTLHLHGDPKSAYSFVQRFFDFQPGQKGEVNHLSVAYLRNRSLDLGMYYF
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHCCCCCCHHHHH
FPAMTSLGQQPVGETLIATHDAPLQRLIFRVLPFLFDPTVAPAVPTSIAVDEFANDDGLA
HHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEE
FVEWRSRLNEKFEPPFNKDQRLKRLANLADYAKGLCDMSDEKDALDEVWREWTLPYLDGN
EHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC
P
C
>Mature Secondary Structure
MKRPKVRAVTPVIQNKPVSYADRLITLSGGPALIWPYHNILPGEGPFEIAPDSNCYRNPN
CCCCCCCEECHHHHCCCCCHHCEEEEECCCCEEECCHHHCCCCCCCEEECCCCCCCCCCH
WVEQLPSSIPRNKVIVNLLPALTEEWLANGKFRIDPERWIMDIVVHYEERGVCFRGSYAA
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCEEEECCHHH
DLAKILRGNADALRYNWTLLFYYVAIIKKLLERRNVEEAMQELVKVSKADVPRAGMMLSL
HHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHH
GALSLFLKADQTLHLHGDPKSAYSFVQRFFDFQPGQKGEVNHLSVAYLRNRSLDLGMYYF
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHCCCCCCHHHHH
FPAMTSLGQQPVGETLIATHDAPLQRLIFRVLPFLFDPTVAPAVPTSIAVDEFANDDGLA
HHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEE
FVEWRSRLNEKFEPPFNKDQRLKRLANLADYAKGLCDMSDEKDALDEVWREWTLPYLDGN
EHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA