Definition | Agrobacterium vitis S4 plasmid pAtS4b, complete sequence. |
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Accession | NC_011991 |
Length | 130,435 |
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The map label for this gene is 222109141
Identifier: 222109141
GI number: 222109141
Start: 26662
End: 27747
Strand: Direct
Name: 222109141
Synonym: Avi_9529
Alternate gene names: NA
Gene position: 26662-27747 (Clockwise)
Preceding gene: 222109140
Following gene: 222109147
Centisome position: 20.44
GC content: 52.3
Gene sequence:
>1086_bases TTGAAACGGCCGAAAGTCAGGGCTGTTACCCCGGTCATTCAGAACAAGCCCGTTTCGTACGCCGATCGCCTCATTACACT TTCCGGCGGACCAGCGCTGATCTGGCCATATCACAACATCTTACCGGGCGAAGGACCTTTCGAGATTGCACCTGACAGCA ACTGCTATCGAAATCCGAATTGGGTTGAGCAACTGCCGAGCAGCATACCACGAAACAAAGTCATCGTGAACTTGTTGCCC GCGCTAACGGAGGAGTGGTTGGCCAATGGGAAATTTCGCATCGATCCTGAACGATGGATTATGGACATTGTCGTGCACTA CGAGGAGCGCGGTGTCTGTTTTCGCGGAAGCTATGCGGCCGATCTTGCTAAGATCCTGCGCGGAAATGCAGATGCCTTGC GTTACAACTGGACTCTGCTGTTTTACTACGTTGCGATTATCAAAAAGCTATTAGAAAGACGCAACGTTGAAGAAGCGATG CAGGAGCTCGTCAAGGTCAGCAAGGCCGACGTCCCGAGAGCTGGGATGATGCTGTCACTCGGCGCGTTGAGCCTCTTTTT AAAGGCCGATCAGACGTTACACCTTCACGGAGACCCAAAGTCTGCCTACTCGTTCGTTCAGAGGTTTTTCGACTTTCAAC CTGGCCAGAAAGGCGAGGTAAATCATTTGTCCGTCGCCTATCTCAGAAACCGGTCGCTTGACCTTGGGATGTACTACTTC TTTCCGGCCATGACGTCGCTTGGCCAACAGCCCGTTGGCGAGACATTAATCGCAACGCATGATGCTCCGCTCCAGCGTCT GATATTTCGAGTTTTACCATTCTTGTTTGATCCGACAGTCGCCCCCGCTGTCCCGACGTCGATCGCTGTGGATGAGTTCG CCAATGACGATGGTCTGGCGTTCGTTGAATGGCGCTCCCGGCTAAATGAAAAATTTGAACCACCTTTCAATAAGGACCAA AGACTTAAGCGGCTCGCCAATCTTGCAGATTACGCCAAGGGCCTCTGCGATATGAGCGACGAAAAAGATGCGCTCGATGA GGTCTGGCGCGAATGGACGCTTCCCTATCTGGATGGTAACCCATAG
Upstream 100 bases:
>100_bases GGCAACGACATTGACGAAACTTCTACAGAAATCCACGAAACCCAAATTGACGAATATAAAGAGCCGCGCCACCTGTCTTC TTTGCCGGCTCATTTGGCGA
Downstream 100 bases:
>100_bases CGACCTCGTTCGCGGCCATACTCGGGTTGTTATGGTGCCTGCATCACCCTTCACAATTAGCAGGGTGCGGAAATAGGCTC GTTCGGGGTCGATCTGAGTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 361; Mature: 361
Protein sequence:
>361_residues MKRPKVRAVTPVIQNKPVSYADRLITLSGGPALIWPYHNILPGEGPFEIAPDSNCYRNPNWVEQLPSSIPRNKVIVNLLP ALTEEWLANGKFRIDPERWIMDIVVHYEERGVCFRGSYAADLAKILRGNADALRYNWTLLFYYVAIIKKLLERRNVEEAM QELVKVSKADVPRAGMMLSLGALSLFLKADQTLHLHGDPKSAYSFVQRFFDFQPGQKGEVNHLSVAYLRNRSLDLGMYYF FPAMTSLGQQPVGETLIATHDAPLQRLIFRVLPFLFDPTVAPAVPTSIAVDEFANDDGLAFVEWRSRLNEKFEPPFNKDQ RLKRLANLADYAKGLCDMSDEKDALDEVWREWTLPYLDGNP
Sequences:
>Translated_361_residues MKRPKVRAVTPVIQNKPVSYADRLITLSGGPALIWPYHNILPGEGPFEIAPDSNCYRNPNWVEQLPSSIPRNKVIVNLLP ALTEEWLANGKFRIDPERWIMDIVVHYEERGVCFRGSYAADLAKILRGNADALRYNWTLLFYYVAIIKKLLERRNVEEAM QELVKVSKADVPRAGMMLSLGALSLFLKADQTLHLHGDPKSAYSFVQRFFDFQPGQKGEVNHLSVAYLRNRSLDLGMYYF FPAMTSLGQQPVGETLIATHDAPLQRLIFRVLPFLFDPTVAPAVPTSIAVDEFANDDGLAFVEWRSRLNEKFEPPFNKDQ RLKRLANLADYAKGLCDMSDEKDALDEVWREWTLPYLDGNP >Mature_361_residues MKRPKVRAVTPVIQNKPVSYADRLITLSGGPALIWPYHNILPGEGPFEIAPDSNCYRNPNWVEQLPSSIPRNKVIVNLLP ALTEEWLANGKFRIDPERWIMDIVVHYEERGVCFRGSYAADLAKILRGNADALRYNWTLLFYYVAIIKKLLERRNVEEAM QELVKVSKADVPRAGMMLSLGALSLFLKADQTLHLHGDPKSAYSFVQRFFDFQPGQKGEVNHLSVAYLRNRSLDLGMYYF FPAMTSLGQQPVGETLIATHDAPLQRLIFRVLPFLFDPTVAPAVPTSIAVDEFANDDGLAFVEWRSRLNEKFEPPFNKDQ RLKRLANLADYAKGLCDMSDEKDALDEVWREWTLPYLDGNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41158; Mature: 41158
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRPKVRAVTPVIQNKPVSYADRLITLSGGPALIWPYHNILPGEGPFEIAPDSNCYRNPN CCCCCCCEECHHHHCCCCCHHCEEEEECCCCEEECCHHHCCCCCCCEEECCCCCCCCCCH WVEQLPSSIPRNKVIVNLLPALTEEWLANGKFRIDPERWIMDIVVHYEERGVCFRGSYAA HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCEEEECCHHH DLAKILRGNADALRYNWTLLFYYVAIIKKLLERRNVEEAMQELVKVSKADVPRAGMMLSL HHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHH GALSLFLKADQTLHLHGDPKSAYSFVQRFFDFQPGQKGEVNHLSVAYLRNRSLDLGMYYF HHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHCCCCCCHHHHH FPAMTSLGQQPVGETLIATHDAPLQRLIFRVLPFLFDPTVAPAVPTSIAVDEFANDDGLA HHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEE FVEWRSRLNEKFEPPFNKDQRLKRLANLADYAKGLCDMSDEKDALDEVWREWTLPYLDGN EHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC P C >Mature Secondary Structure MKRPKVRAVTPVIQNKPVSYADRLITLSGGPALIWPYHNILPGEGPFEIAPDSNCYRNPN CCCCCCCEECHHHHCCCCCHHCEEEEECCCCEEECCHHHCCCCCCCEEECCCCCCCCCCH WVEQLPSSIPRNKVIVNLLPALTEEWLANGKFRIDPERWIMDIVVHYEERGVCFRGSYAA HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCEEEECCHHH DLAKILRGNADALRYNWTLLFYYVAIIKKLLERRNVEEAMQELVKVSKADVPRAGMMLSL HHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHH GALSLFLKADQTLHLHGDPKSAYSFVQRFFDFQPGQKGEVNHLSVAYLRNRSLDLGMYYF HHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHCCCCCCHHHHH FPAMTSLGQQPVGETLIATHDAPLQRLIFRVLPFLFDPTVAPAVPTSIAVDEFANDDGLA HHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEE FVEWRSRLNEKFEPPFNKDQRLKRLANLADYAKGLCDMSDEKDALDEVWREWTLPYLDGN EHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC P C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA