Click here to switch to the map view.

The map label for this gene is intX [H]

Identifier: 222109126

GI number: 222109126

Start: 7190

End: 8302

Strand: Reverse

Name: intX [H]

Synonym: Avi_9510

Alternate gene names: 222109126

Gene position: 8302-7190 (Counterclockwise)

Preceding gene: 222109127

Following gene: 222109121

Centisome position: 6.36

GC content: 63.61

Gene sequence:

>1113_bases
CTGGACGCGCTCGATGCCATCCTGCCCTTCGACCGGCGCGACCAGCTCGCCGAGTTGCTCACCGACGACGACGTCGCGAC
GCTCAAGCACCTCGCCAGCGAAGGCATGGGCGACAACACCATGCGGGCGCTGGCGTCCGATCTCGCCTATCTGGAGGCGT
GGTGCGTGCTCGCAACAGGCACTCCCCTCCCCTGGCCCGCACCAGAAAGTTTGTTGCTGAAATTCGTCGCCCACCATCTG
TGGGATCCAGCCGAGCGTGAAACCAATGCCGATCACGGAATGCCGGAGGACGTGGCGATCGCGCTTCGTGTCAAGGGACT
GCTCAGAAGCACTGGCCCGCATGCGCCGGCAACTGTCCGCCGTCGACTGACGAGCTGGTCGATCCTGACCCGTTGGCGTG
GCCTGACCGGATCGTTTTCGGCGCCGTCGCTGAAAAGCGCGCTTCGGTTGGCCGTCCGTGCCAGCAACCGGCCCAGACAG
AGAAAAAGCAAGAAGGCCGTGACCGGCGATATCCTCGCCAAGCTGCTCACCGCCTGTGCCGGCGATCGGCTGGTCGATCT
GCGCGACCGGGCGCTGCTGCTGATGGCGTTTGCGTCCGGCGGCCGCCGGCGTTCCGAGGTAGCAGGCTTGCGCGTCGAGG
ATCTGATGGAAGAGGAACCAGTCCGCGCAAACCCCTCCGACGAGCTCTCCCCTCTTCTGCCCTGCCTCACCATCCGTCTC
GGTCGCACCAAAACCACGTCGGCTGACGATGATGAACATGTCGTGCTGATCGGCAGGCCTGTGACCGCACTCAAGCATTG
GCTTGAACAGGCAAAGATCGAAGCAGGACCCGTCTTCCGCCGCATCGACCAATGGGGCAATCTCGACCGCCATGCCCTGA
CGCCGCAGTCCGTCAATCTTATCCTTAAGACGCGGATAGCACAGGCTGGTCTCGATCCAATGCAGTTCTCCGCCCATGGC
CTGCGATCGGGTTACCTTACGGAGGCTGCCAACCGCGGCATTCCGCTGCCTGAAGCGATGCAGCAGTCTCTGCACAAGTC
GGTCACTCAGGCGTCGGGGTACTACAACAACACCGAACGCAAACTGGGACGGGCGGCACGCCTGGTGCTCTGA

Upstream 100 bases:

>100_bases
ACCGCCGCCCGAGGTGAAGGCATCACCGTCGTTGGGCCGCTCGAACATGAGCACTGACCTGTCGCTTTCGGGTAATGACG
TTCTAAGGCGTGCCGAAGAG

Downstream 100 bases:

>100_bases
ACAGGCTGCCGCCTCACCAACCTTTAATTGTGCGTTCTAAAACGGCTTATCCAGCCTGAGCGGCTGAATGGCTCTTGGCC
CGCGCGCCCGGTCGCCACTG

Product: phage-related integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MDALDAILPFDRRDQLAELLTDDDVATLKHLASEGMGDNTMRALASDLAYLEAWCVLATGTPLPWPAPESLLLKFVAHHL
WDPAERETNADHGMPEDVAIALRVKGLLRSTGPHAPATVRRRLTSWSILTRWRGLTGSFSAPSLKSALRLAVRASNRPRQ
RKSKKAVTGDILAKLLTACAGDRLVDLRDRALLLMAFASGGRRRSEVAGLRVEDLMEEEPVRANPSDELSPLLPCLTIRL
GRTKTTSADDDEHVVLIGRPVTALKHWLEQAKIEAGPVFRRIDQWGNLDRHALTPQSVNLILKTRIAQAGLDPMQFSAHG
LRSGYLTEAANRGIPLPEAMQQSLHKSVTQASGYYNNTERKLGRAARLVL

Sequences:

>Translated_370_residues
MDALDAILPFDRRDQLAELLTDDDVATLKHLASEGMGDNTMRALASDLAYLEAWCVLATGTPLPWPAPESLLLKFVAHHL
WDPAERETNADHGMPEDVAIALRVKGLLRSTGPHAPATVRRRLTSWSILTRWRGLTGSFSAPSLKSALRLAVRASNRPRQ
RKSKKAVTGDILAKLLTACAGDRLVDLRDRALLLMAFASGGRRRSEVAGLRVEDLMEEEPVRANPSDELSPLLPCLTIRL
GRTKTTSADDDEHVVLIGRPVTALKHWLEQAKIEAGPVFRRIDQWGNLDRHALTPQSVNLILKTRIAQAGLDPMQFSAHG
LRSGYLTEAANRGIPLPEAMQQSLHKSVTQASGYYNNTERKLGRAARLVL
>Mature_370_residues
MDALDAILPFDRRDQLAELLTDDDVATLKHLASEGMGDNTMRALASDLAYLEAWCVLATGTPLPWPAPESLLLKFVAHHL
WDPAERETNADHGMPEDVAIALRVKGLLRSTGPHAPATVRRRLTSWSILTRWRGLTGSFSAPSLKSALRLAVRASNRPRQ
RKSKKAVTGDILAKLLTACAGDRLVDLRDRALLLMAFASGGRRRSEVAGLRVEDLMEEEPVRANPSDELSPLLPCLTIRL
GRTKTTSADDDEHVVLIGRPVTALKHWLEQAKIEAGPVFRRIDQWGNLDRHALTPQSVNLILKTRIAQAGLDPMQFSAHG
LRSGYLTEAANRGIPLPEAMQQSLHKSVTQASGYYNNTERKLGRAARLVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40759; Mature: 40759

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALDAILPFDRRDQLAELLTDDDVATLKHLASEGMGDNTMRALASDLAYLEAWCVLATG
CCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
TPLPWPAPESLLLKFVAHHLWDPAERETNADHGMPEDVAIALRVKGLLRSTGPHAPATVR
CCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
RRLTSWSILTRWRGLTGSFSAPSLKSALRLAVRASNRPRQRKSKKAVTGDILAKLLTACA
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GDRLVDLRDRALLLMAFASGGRRRSEVAGLRVEDLMEEEPVRANPSDELSPLLPCLTIRL
CCCEEHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
GRTKTTSADDDEHVVLIGRPVTALKHWLEQAKIEAGPVFRRIDQWGNLDRHALTPQSVNL
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHCCCHHHHHH
ILKTRIAQAGLDPMQFSAHGLRSGYLTEAANRGIPLPEAMQQSLHKSVTQASGYYNNTER
HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
KLGRAARLVL
HHHHHHHHCC
>Mature Secondary Structure
MDALDAILPFDRRDQLAELLTDDDVATLKHLASEGMGDNTMRALASDLAYLEAWCVLATG
CCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
TPLPWPAPESLLLKFVAHHLWDPAERETNADHGMPEDVAIALRVKGLLRSTGPHAPATVR
CCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
RRLTSWSILTRWRGLTGSFSAPSLKSALRLAVRASNRPRQRKSKKAVTGDILAKLLTACA
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GDRLVDLRDRALLLMAFASGGRRRSEVAGLRVEDLMEEEPVRANPSDELSPLLPCLTIRL
CCCEEHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
GRTKTTSADDDEHVVLIGRPVTALKHWLEQAKIEAGPVFRRIDQWGNLDRHALTPQSVNL
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHCCCHHHHHH
ILKTRIAQAGLDPMQFSAHGLRSGYLTEAANRGIPLPEAMQQSLHKSVTQASGYYNNTER
HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
KLGRAARLVL
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]