Definition | Agrobacterium vitis S4 plasmid pAtS4b, complete sequence. |
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Accession | NC_011991 |
Length | 130,435 |
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The map label for this gene is 222109121
Identifier: 222109121
GI number: 222109121
Start: 3932
End: 4750
Strand: Reverse
Name: 222109121
Synonym: Avi_9504
Alternate gene names: NA
Gene position: 4750-3932 (Counterclockwise)
Preceding gene: 222109126
Following gene: NA
Centisome position: 3.64
GC content: 57.26
Gene sequence:
>819_bases ATGAGTGAAAAAACGATCACAACATCCCACGGACAGATCGCAATCTACGACACACCCGGAGGCGAAATCCCCCTCCTCAT GATCCACGCCAATTCCGTCTGCAAGGAGACATTTCATTTCCAGATTGAGGCCCTAGCTGGCAAGTACCGTATTATCGCCA TCGACCTGCCGGGCCATGGTCAATCCTCCGATGCCATCGATCCGCTACGCACTTACAACTTCAATGGATATGCCGACGCC ATCTGCGAAGTGATTGAAGCACTCGGCGTCGATCGTTTCGCCATACTCGGCCACTCTCTCGGCGGCCACGTCGCCCTGGA ACTGATGAGGCTCCTGCCGGAAAAGACCGCGGGCACGATGATCTTCGGCACACCGCCAATCCCACCGGGCCCCGAAGGTG CAGCGCTCGGATTTCTTCCCAATCCGGAGTTCGCCTACACGGGAAAACAGATCCTGAGTGAGCAAGAAATCGACATGGTC GTTGCGTTGGCGCTCGGATCGGATGCCGTCCACGACACGTTCTGGAAAAGCGCTGTCAGACGAACGGACGGACGCTCGCG CGAGTTAATGATCGATGCAGCCCTTGCCGGAAGGCATTCCGATCAGCGCGCTCTTGTCGAGACCTCTGCCGTTCCGCTGG CCATCGTCAACGGCGCGGACGATCCAGTGATCAATCTCGATTACATCGATAACCTGACTTACGGGAACCTCTGGAACCGC GGCGCTGTCCGCGTGGAAAATGCCGGACACGGTCTCCACTGGCAAAGGCACAAGGAGTTCAACGTCCTGCTGGATAACTT CCTCACCAGTGTTGCGTGA
Upstream 100 bases:
>100_bases TGGCCTCTAACGAGCTTCAGATTGTGGTCACAGAGATCGTTTAGGTCCTTCAGCAACATGGCCAGGACAAGAATTTGAAG GTGAACACGGAGCATTGATG
Downstream 100 bases:
>100_bases GACGGAAACAGGGCCGAATATCACCATCTCATCCCGCCTGTCGATCGTTCCCGGCATTGGCGCGCGTCAAGGCCATCAGC ATCGGGCCGAGGGAAAACTC
Product: alpha/beta hydrolase protein
Products: NA
Alternate protein names: Hydrolase; Alpha/Beta Hydrolase Fold Protein; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase; 3-Oxoadipate Enol-Lactonase; Non-Heme Peroxidase; Alpha/Beta Fold Family Hydrolase/Acetyltransferase; Alpha/Beta Hydrolase Domain-Containing Protein; Acyltransferase; Alpha/Beta Hydrolase Protein; Alpha/Beta Fold Hydrolase; Epoxide Hydrolase
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MSEKTITTSHGQIAIYDTPGGEIPLLMIHANSVCKETFHFQIEALAGKYRIIAIDLPGHGQSSDAIDPLRTYNFNGYADA ICEVIEALGVDRFAILGHSLGGHVALELMRLLPEKTAGTMIFGTPPIPPGPEGAALGFLPNPEFAYTGKQILSEQEIDMV VALALGSDAVHDTFWKSAVRRTDGRSRELMIDAALAGRHSDQRALVETSAVPLAIVNGADDPVINLDYIDNLTYGNLWNR GAVRVENAGHGLHWQRHKEFNVLLDNFLTSVA
Sequences:
>Translated_272_residues MSEKTITTSHGQIAIYDTPGGEIPLLMIHANSVCKETFHFQIEALAGKYRIIAIDLPGHGQSSDAIDPLRTYNFNGYADA ICEVIEALGVDRFAILGHSLGGHVALELMRLLPEKTAGTMIFGTPPIPPGPEGAALGFLPNPEFAYTGKQILSEQEIDMV VALALGSDAVHDTFWKSAVRRTDGRSRELMIDAALAGRHSDQRALVETSAVPLAIVNGADDPVINLDYIDNLTYGNLWNR GAVRVENAGHGLHWQRHKEFNVLLDNFLTSVA >Mature_271_residues SEKTITTSHGQIAIYDTPGGEIPLLMIHANSVCKETFHFQIEALAGKYRIIAIDLPGHGQSSDAIDPLRTYNFNGYADAI CEVIEALGVDRFAILGHSLGGHVALELMRLLPEKTAGTMIFGTPPIPPGPEGAALGFLPNPEFAYTGKQILSEQEIDMVV ALALGSDAVHDTFWKSAVRRTDGRSRELMIDAALAGRHSDQRALVETSAVPLAIVNGADDPVINLDYIDNLTYGNLWNRG AVRVENAGHGLHWQRHKEFNVLLDNFLTSVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29536; Mature: 29405
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKTITTSHGQIAIYDTPGGEIPLLMIHANSVCKETFHFQIEALAGKYRIIAIDLPGHG CCCCEEEECCCEEEEEECCCCCEEEEEEECCHHHHHHHHEEEEEECCCEEEEEEECCCCC QSSDAIDPLRTYNFNGYADAICEVIEALGVDRFAILGHSLGGHVALELMRLLPEKTAGTM CCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE IFGTPPIPPGPEGAALGFLPNPEFAYTGKQILSEQEIDMVVALALGSDAVHDTFWKSAVR EECCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHH RTDGRSRELMIDAALAGRHSDQRALVETSAVPLAIVNGADDPVINLDYIDNLTYGNLWNR HCCCCCCEEEEEEHHHCCCCCCHHEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCCC GAVRVENAGHGLHWQRHKEFNVLLDNFLTSVA CCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure SEKTITTSHGQIAIYDTPGGEIPLLMIHANSVCKETFHFQIEALAGKYRIIAIDLPGHG CCCEEEECCCEEEEEECCCCCEEEEEEECCHHHHHHHHEEEEEECCCEEEEEEECCCCC QSSDAIDPLRTYNFNGYADAICEVIEALGVDRFAILGHSLGGHVALELMRLLPEKTAGTM CCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE IFGTPPIPPGPEGAALGFLPNPEFAYTGKQILSEQEIDMVVALALGSDAVHDTFWKSAVR EECCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHH RTDGRSRELMIDAALAGRHSDQRALVETSAVPLAIVNGADDPVINLDYIDNLTYGNLWNR HCCCCCCEEEEEEHHHCCCCCCHHEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCCC GAVRVENAGHGLHWQRHKEFNVLLDNFLTSVA CCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA