Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 187736181

GI number: 187736181

Start: 2059502

End: 2060539

Strand: Reverse

Name: cydB [H]

Synonym: Amuc_1694

Alternate gene names: 187736181

Gene position: 2060539-2059502 (Counterclockwise)

Preceding gene: 187736182

Following gene: 187736180

Centisome position: 77.34

GC content: 56.45

Gene sequence:

>1038_bases
ATGTTGGACAATCTCACTCTCGCAGACCTGCAAATCATCTGGTTCATCCTCGTCGGCGTGCTTTTCTCCGGATACGCCAT
CCTGGACGGCTTTGACCTGGGCACCGGAGCTCTTCAGCTTTTCATCAAGGGCGATGAAAACAGAAGACTCACACTAAATG
CCGTGGGCCCTGTATGGGACGGAAACGAAGTCTGGCTCATCACAGGCGGAGGAGCCCTCTTCGCTGCCTTTCCGTACGTA
TACGCCTCCGTCTTCTCCGGGTTTTACCTGGCCTTCATGCTCCTGCTGCTCACCCTTATCTTCCGTGCCGTGTCCATTGA
ATTCAGAAGCAAACAGCCCATGAAATGGTGGCGCAGGGGATGGGACACCACTTTCTCCATCAGCAGCCTTCTGGCAGCTC
TGCTCATCGGCGTAGCCATGGGGAACGTCACCAAAGGCATTCCTCTGGACGACCATGGCAACTTCACCGGAACATTTCTC
AGCCTGCTGAATCCTTATTCCATTCTTCTGGGACTGACGACGGTCGCCCTGTTCTCCATGCACGGGGGAATCTACCTGCT
GATGAAAACCCAGGGAAGCCTGCAGGAACAAATCAGAAAACTGCTCAGACCCTGCGTCATCATCTTCACTGTCCTGATCA
TCCTGCACGGGGCGGCCACCCTGCTGTACGTGCCGCACGTAGCGGCCGCCCTGGAACGCTCCCCCTGGATTTACGGAATC
GCTGCCCTGGCAGTCATTTCCATCGCGTCCATCTGGATATTCATCCACAGGAACCGTCCGGGCTGGGCCTTTGTCGCCTC
CTGCTCCACCATGGGCTGCATGATGGCTCTCTTCGGGACAGCGATGTTCCCCAACCTGCTCTACTCCATGCCCAATCCGG
AACATTCCCTGACGCTCGCCAACGGCTCATCCACCCGGGAAAGCCTGGTCGTGATGACATACATAGCCATTCTGGGCGTG
CCGCTCGTCCTGGCTTATTCCGCTGCCATTTACTGGGTCTTCCGCGGAAAAGTCCAGCTCAACGAACACAGTTACTGA

Upstream 100 bases:

>100_bases
AAAGGTCCGGACCAGGAAGCTGGCGAAGACGACGGCGCCGGGGAAGGCAAACTCCAGGTTCCTTTTGTCAAAGACTAATC
TTTATCCCTCTTTAAAAATC

Downstream 100 bases:

>100_bases
TGCCCTGCGGGCAAAAATAGCGATCAGCGAACCGAAAACGCCCTGTACCATCCGCCCTGCCGCATGAATGCCTCCATCTT
CTCCAAACTCCCGCCGGAGG

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MLDNLTLADLQIIWFILVGVLFSGYAILDGFDLGTGALQLFIKGDENRRLTLNAVGPVWDGNEVWLITGGGALFAAFPYV
YASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRGWDTTFSISSLLAALLIGVAMGNVTKGIPLDDHGNFTGTFL
SLLNPYSILLGLTTVALFSMHGGIYLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAALERSPWIYGI
AALAVISIASIWIFIHRNRPGWAFVASCSTMGCMMALFGTAMFPNLLYSMPNPEHSLTLANGSSTRESLVVMTYIAILGV
PLVLAYSAAIYWVFRGKVQLNEHSY

Sequences:

>Translated_345_residues
MLDNLTLADLQIIWFILVGVLFSGYAILDGFDLGTGALQLFIKGDENRRLTLNAVGPVWDGNEVWLITGGGALFAAFPYV
YASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRGWDTTFSISSLLAALLIGVAMGNVTKGIPLDDHGNFTGTFL
SLLNPYSILLGLTTVALFSMHGGIYLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAALERSPWIYGI
AALAVISIASIWIFIHRNRPGWAFVASCSTMGCMMALFGTAMFPNLLYSMPNPEHSLTLANGSSTRESLVVMTYIAILGV
PLVLAYSAAIYWVFRGKVQLNEHSY
>Mature_345_residues
MLDNLTLADLQIIWFILVGVLFSGYAILDGFDLGTGALQLFIKGDENRRLTLNAVGPVWDGNEVWLITGGGALFAAFPYV
YASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRGWDTTFSISSLLAALLIGVAMGNVTKGIPLDDHGNFTGTFL
SLLNPYSILLGLTTVALFSMHGGIYLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAALERSPWIYGI
AALAVISIASIWIFIHRNRPGWAFVASCSTMGCMMALFGTAMFPNLLYSMPNPEHSLTLANGSSTRESLVVMTYIAILGV
PLVLAYSAAIYWVFRGKVQLNEHSY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=371, Percent_Identity=37.1967654986523, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1787213, Length=360, Percent_Identity=32.5, Blast_Score=182, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 38005; Mature: 38005

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDNLTLADLQIIWFILVGVLFSGYAILDGFDLGTGALQLFIKGDENRRLTLNAVGPVWD
CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCC
GNEVWLITGGGALFAAFPYVYASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRG
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
WDTTFSISSLLAALLIGVAMGNVTKGIPLDDHGNFTGTFLSLLNPYSILLGLTTVALFSM
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HGGIYLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAALERSPWIYGI
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AALAVISIASIWIFIHRNRPGWAFVASCSTMGCMMALFGTAMFPNLLYSMPNPEHSLTLA
HHHHHHHHHHHEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
NGSSTRESLVVMTYIAILGVPLVLAYSAAIYWVFRGKVQLNEHSY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECEEEECCCCC
>Mature Secondary Structure
MLDNLTLADLQIIWFILVGVLFSGYAILDGFDLGTGALQLFIKGDENRRLTLNAVGPVWD
CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCC
GNEVWLITGGGALFAAFPYVYASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRG
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
WDTTFSISSLLAALLIGVAMGNVTKGIPLDDHGNFTGTFLSLLNPYSILLGLTTVALFSM
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HGGIYLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAALERSPWIYGI
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AALAVISIASIWIFIHRNRPGWAFVASCSTMGCMMALFGTAMFPNLLYSMPNPEHSLTLA
HHHHHHHHHHHEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
NGSSTRESLVVMTYIAILGVPLVLAYSAAIYWVFRGKVQLNEHSY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]