| Definition | Acaryochloris marina MBIC11017 plasmid pREB3, complete sequence. |
|---|---|
| Accession | NC_009928 |
| Length | 273,121 |
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The map label for this gene is rbpF [H]
Identifier: 158340529
GI number: 158340529
Start: 72752
End: 73027
Strand: Reverse
Name: rbpF [H]
Synonym: AM1_C0074
Alternate gene names: 158340529
Gene position: 73027-72752 (Counterclockwise)
Preceding gene: 158340530
Following gene: 158340528
Centisome position: 26.74
GC content: 44.57
Gene sequence:
>276_bases ATGTCGATTTACGTTGGGAATCTCTCTTACGAAGTTGCTCAAGAAGATCTCAGGGCCATTTTTTCTGAATATGGAGAAGT CACAAATGTTCATCTCCCAAAAGACCGTGAGACTGGTAAGTTACGGGGTTTTGCCTTTGTTGATTTGGGGAATGATGCTG ATGAAGTCAAAGCCATTGAAGACCTAGATGGTGCCGAATGGATGGGACGTTCCCTGAAAGTGAACAAGGCAAGACCTCGA GAGAAGAATAGAGGAAGCAGCAGGAAACGAGAATAG
Upstream 100 bases:
>100_bases ACTTTATTTCGCGGAAGGAGGAAGTTAAATAGTTGTGGGACGATAGCTTAAACAATGATGGCATGTCTAGTCCTCACCTT GCTGATTTTGGGTATTATTT
Downstream 100 bases:
>100_bases CTGATTTTCTCCCTATATGATATGTGTGAAGAAGAAGATCTTACTCACACATGTTCATTGGTAGCATTAGTTATGTTGAG GCCGTTCTAGATGCCAGACT
Product: RNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 91; Mature: 90
Protein sequence:
>91_residues MSIYVGNLSYEVAQEDLRAIFSEYGEVTNVHLPKDRETGKLRGFAFVDLGNDADEVKAIEDLDGAEWMGRSLKVNKARPR EKNRGSSRKRE
Sequences:
>Translated_91_residues MSIYVGNLSYEVAQEDLRAIFSEYGEVTNVHLPKDRETGKLRGFAFVDLGNDADEVKAIEDLDGAEWMGRSLKVNKARPR EKNRGSSRKRE >Mature_90_residues SIYVGNLSYEVAQEDLRAIFSEYGEVTNVHLPKDRETGKLRGFAFVDLGNDADEVKAIEDLDGAEWMGRSLKVNKARPRE KNRGSSRKRE
Specific function: Unknown
COG id: COG0724
COG function: function code R; RNA-binding proteins (RRM domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RRM (RNA recognition motif) domain [H]
Homologues:
Organism=Homo sapiens, GI303305009, Length=86, Percent_Identity=41.8604651162791, Blast_Score=73, Evalue=4e-14, Organism=Homo sapiens, GI5174637, Length=86, Percent_Identity=41.8604651162791, Blast_Score=73, Evalue=5e-14, Organism=Homo sapiens, GI45439316, Length=86, Percent_Identity=41.8604651162791, Blast_Score=72, Evalue=7e-14, Organism=Homo sapiens, GI14149675, Length=83, Percent_Identity=42.1686746987952, Blast_Score=72, Evalue=1e-13, Organism=Homo sapiens, GI4557493, Length=83, Percent_Identity=42.1686746987952, Blast_Score=71, Evalue=2e-13, Organism=Homo sapiens, GI47271443, Length=77, Percent_Identity=42.8571428571429, Blast_Score=67, Evalue=3e-12, Organism=Homo sapiens, GI118600973, Length=73, Percent_Identity=34.2465753424658, Blast_Score=65, Evalue=9e-12, Organism=Homo sapiens, GI15055543, Length=78, Percent_Identity=39.7435897435897, Blast_Score=64, Evalue=2e-11, Organism=Homo sapiens, GI35493811, Length=80, Percent_Identity=35, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI4757926, Length=74, Percent_Identity=36.4864864864865, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI56699409, Length=75, Percent_Identity=41.3333333333333, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI116734696, Length=74, Percent_Identity=35.1351351351351, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI5032069, Length=82, Percent_Identity=36.5853658536585, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI116734694, Length=74, Percent_Identity=35.1351351351351, Blast_Score=63, Evalue=4e-11, Organism=Homo sapiens, GI116734698, Length=74, Percent_Identity=35.1351351351351, Blast_Score=63, Evalue=4e-11, Organism=Homo sapiens, GI4502847, Length=82, Percent_Identity=36.5853658536585, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=42.8571428571429, Blast_Score=78, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=41.4634146341463, Blast_Score=76, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=44.1558441558442, Blast_Score=74, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=40.7894736842105, Blast_Score=68, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17532167, Length=73, Percent_Identity=38.3561643835616, Blast_Score=65, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17539498, Length=87, Percent_Identity=34.4827586206897, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322195, Length=80, Percent_Identity=36.25, Blast_Score=60, Evalue=5e-11, Organism=Drosophila melanogaster, GI21358099, Length=78, Percent_Identity=43.5897435897436, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI17137710, Length=83, Percent_Identity=42.1686746987952, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24582417, Length=80, Percent_Identity=37.5, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI45550943, Length=80, Percent_Identity=37.5, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI24582419, Length=80, Percent_Identity=37.5, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI24582423, Length=80, Percent_Identity=37.5, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI24582421, Length=80, Percent_Identity=37.5, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI19920866, Length=74, Percent_Identity=39.1891891891892, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24582412, Length=74, Percent_Identity=39.1891891891892, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=35.8974358974359, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI24661759, Length=81, Percent_Identity=38.2716049382716, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012677 - InterPro: IPR000504 [H]
Pfam domain/function: PF00076 RRM_1 [H]
EC number: NA
Molecular weight: Translated: 10332; Mature: 10200
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: PS50102 RRM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIYVGNLSYEVAQEDLRAIFSEYGEVTNVHLPKDRETGKLRGFAFVDLGNDADEVKAIE CEEEECCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEECCCCHHHHHHHH DLDGAEWMGRSLKVNKARPREKNRGSSRKRE CCCCHHHCCCCEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure SIYVGNLSYEVAQEDLRAIFSEYGEVTNVHLPKDRETGKLRGFAFVDLGNDADEVKAIE EEEECCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEECCCCHHHHHHHH DLDGAEWMGRSLKVNKARPREKNRGSSRKRE CCCCHHHCCCCEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]