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The map label for this gene is rbsB [H]

Identifier: 159185396

GI number: 159185396

Start: 2820108

End: 2821049

Strand: Reverse

Name: rbsB [H]

Synonym: Atu2817

Alternate gene names: 159185396

Gene position: 2821049-2820108 (Counterclockwise)

Preceding gene: 159185397

Following gene: 159185395

Centisome position: 99.28

GC content: 58.81

Gene sequence:

>942_bases
ATGAAGAAAATTACGACTGCCCTTCTGACATCCGCAATCGCGCTGTGGAGCGTTTCCACCGTGCAGGCCGGTGAAATCGC
CGTTATCGTCAAGACCGTCAACTCCACCTTCTGGCAGAACGTCCAGAAGGGCGCTGACGCGGCGATGAAGAACTCTTCCG
GCAACACCATGACCTTCCAGGGCCCGGCTGCCGAATCGGCGATTGCCGACCAGGTCAACATGGTCGAAAACGCCATCAAC
CGTAAGGTTGCCGGTATCGTTCTGGCGCCTTCCGATCCGGATGCGCTGGTGCCTGCCGTCAAGAAGGCCTGGGAAGCCCG
TATCCCGGTGGTCCTGATCGACTCTCAGCTCGCCAAGGGCTCTGAGCAATATTATCAGTCGTTCCTGGCGACCGACAACA
AGAAAGCCGGCGAACTGGCAGCGCAGGCGCTGATCGACAAGGTCGGCACGGAAGGCAAGATTGCCGTCATGTCCTATGTC
GCCGGTGCCGGTTCCGAAATCGGCCGTGTCGGCGGTTTCACCGATTACATCCAGATGCATTCGAAGCTTCAGATCGTTGG
CCCGTTCTATTCGCAGTCGCAGATGGCAACGGCGCTGAACCAGACCACCGACGTGCTGGCCGCCAATTCCGACCTGAAGG
GCATTTTCGGCGCCAATGAGCCGACCGCGATCGGTGTCGGCCGCGCGCTTGCCCAGTCGGGCAAGGCCGGCAAGGTCATC
GCCATGGGCTTCGACGGTAACCAGGACCTGCAGAGCTTCGTCAAGGACGGCACGCTGGCCGGCATCGTGGTTCAGGGTTC
GTACCAGATGGGTGAAAAGGGCGTGGAAACCGTGACCAAGCTCATCAACAAGGAAAAGGTTGAGAAGTTCGTCGATACCG
GCGTCGTTGTTGTCACCAAGGACAATATCGAAAAGCCTGAGGCCAAGAACGTGCTTTACTGA

Upstream 100 bases:

>100_bases
GACCAGCTGCGCAACCGCCGCTGATCAAAAGGGCTGCGGACCCTTTCCGCAAACAAGATCGGCAGGGGAGGCCCGGTATG
CCGACATCACGGAGGAAGAA

Downstream 100 bases:

>100_bases
TACTGACGGCGCGCCGCCGAAGGGTGGCGCGCCTCATCACCTGCGTGCGGTTTAACCCACCGCTCCATTTCAAGAATTCG
GGAAGTGCCTGCGATGAAAG

Product: ABC transporter, substrate binding protein (ribose)

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: ALBP [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKKITTALLTSAIALWSVSTVQAGEIAVIVKTVNSTFWQNVQKGADAAMKNSSGNTMTFQGPAAESAIADQVNMVENAIN
RKVAGIVLAPSDPDALVPAVKKAWEARIPVVLIDSQLAKGSEQYYQSFLATDNKKAGELAAQALIDKVGTEGKIAVMSYV
AGAGSEIGRVGGFTDYIQMHSKLQIVGPFYSQSQMATALNQTTDVLAANSDLKGIFGANEPTAIGVGRALAQSGKAGKVI
AMGFDGNQDLQSFVKDGTLAGIVVQGSYQMGEKGVETVTKLINKEKVEKFVDTGVVVVTKDNIEKPEAKNVLY

Sequences:

>Translated_313_residues
MKKITTALLTSAIALWSVSTVQAGEIAVIVKTVNSTFWQNVQKGADAAMKNSSGNTMTFQGPAAESAIADQVNMVENAIN
RKVAGIVLAPSDPDALVPAVKKAWEARIPVVLIDSQLAKGSEQYYQSFLATDNKKAGELAAQALIDKVGTEGKIAVMSYV
AGAGSEIGRVGGFTDYIQMHSKLQIVGPFYSQSQMATALNQTTDVLAANSDLKGIFGANEPTAIGVGRALAQSGKAGKVI
AMGFDGNQDLQSFVKDGTLAGIVVQGSYQMGEKGVETVTKLINKEKVEKFVDTGVVVVTKDNIEKPEAKNVLY
>Mature_313_residues
MKKITTALLTSAIALWSVSTVQAGEIAVIVKTVNSTFWQNVQKGADAAMKNSSGNTMTFQGPAAESAIADQVNMVENAIN
RKVAGIVLAPSDPDALVPAVKKAWEARIPVVLIDSQLAKGSEQYYQSFLATDNKKAGELAAQALIDKVGTEGKIAVMSYV
AGAGSEIGRVGGFTDYIQMHSKLQIVGPFYSQSQMATALNQTTDVLAANSDLKGIFGANEPTAIGVGRALAQSGKAGKVI
AMGFDGNQDLQSFVKDGTLAGIVVQGSYQMGEKGVETVTKLINKEKVEKFVDTGVVVVTKDNIEKPEAKNVLY

Specific function: Part of the binding-protein-dependent transport system AlsBAC for D-allose [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790526, Length=297, Percent_Identity=29.96632996633, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790192, Length=302, Percent_Identity=31.7880794701987, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 32950; Mature: 32950

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKITTALLTSAIALWSVSTVQAGEIAVIVKTVNSTFWQNVQKGADAAMKNSSGNTMTFQ
CCHHHHHHHHHHHHHHHCCEECCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
GPAAESAIADQVNMVENAINRKVAGIVLAPSDPDALVPAVKKAWEARIPVVLIDSQLAKG
CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCHHCCC
SEQYYQSFLATDNKKAGELAAQALIDKVGTEGKIAVMSYVAGAGSEIGRVGGFTDYIQMH
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCHHHCCCHHHHHHHH
SKLQIVGPFYSQSQMATALNQTTDVLAANSDLKGIFGANEPTAIGVGRALAQSGKAGKVI
CCEEEECCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEE
AMGFDGNQDLQSFVKDGTLAGIVVQGSYQMGEKGVETVTKLINKEKVEKFVDTGVVVVTK
EEECCCCHHHHHHHCCCCEEEEEEECCHHHCHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
DNIEKPEAKNVLY
CCCCCCCCCCCCC
>Mature Secondary Structure
MKKITTALLTSAIALWSVSTVQAGEIAVIVKTVNSTFWQNVQKGADAAMKNSSGNTMTFQ
CCHHHHHHHHHHHHHHHCCEECCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
GPAAESAIADQVNMVENAINRKVAGIVLAPSDPDALVPAVKKAWEARIPVVLIDSQLAKG
CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCHHCCC
SEQYYQSFLATDNKKAGELAAQALIDKVGTEGKIAVMSYVAGAGSEIGRVGGFTDYIQMH
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCHHHCCCHHHHHHHH
SKLQIVGPFYSQSQMATALNQTTDVLAANSDLKGIFGANEPTAIGVGRALAQSGKAGKVI
CCEEEECCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEE
AMGFDGNQDLQSFVKDGTLAGIVVQGSYQMGEKGVETVTKLINKEKVEKFVDTGVVVVTK
EEECCCCHHHHHHHCCCCEEEEEEECCHHHCHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
DNIEKPEAKNVLY
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 8576032; 9401019; 10064713 [H]