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The map label for this gene is rbsC [H]

Identifier: 159185397

GI number: 159185397

Start: 2821126

End: 2822148

Strand: Reverse

Name: rbsC [H]

Synonym: Atu2818

Alternate gene names: 159185397

Gene position: 2822148-2821126 (Counterclockwise)

Preceding gene: 159185398

Following gene: 159185396

Centisome position: 99.32

GC content: 60.02

Gene sequence:

>1023_bases
ATGGCCAATATTGCAGAACCCAAGAAGGGCTTCGCCGTCAGCGATCGTCAGAAGGACATCATCCAGAAATTTGCGGCGCT
CGGCAGCCTCTTTGCGCTGGTCGCGGTCTTCTCCGCGACCAGTAACGCCTTCTTCACCGTCAATAATGGCATGACGATCG
CGCTGCAGGTGACTTCTATTGCGCTGCTCGGCATTGGTGCCACCTGTGTCATCATCACCGGCGGCATCGATCTTTCCGTC
GGTTCGGTGCTTGCGCTTGCCGGCGTCGTTGCCGCCCTTGCGGTGAAGGAACTCGGCATGCCGGTGCCCATCGGCATGTT
GCTCGGCATTCTGACGGGGTCGCTTTGTGGCCTCATCAACGGTCTTCTGGTGACGCGCTTCAAGCTGCCGCCCTTCATCG
CCACTCTTGGCATGATGCTGATTGCCCGCGGTGTGGCCCTGCAGATCACCGGTGCGCGCGCCGTATCCGGCCTTGGCGAA
TCCTTCGGTGAACTCGGCAATGGCGCACTCTTCCGTATCGTCACTATCGGTGACGATGGCTTTCCGAATGTCGTGTTTCC
CGGCATTCCCTATCCGGTCATCCTGATGGTGGTGATTGCGCTTGCGGTTTCCTTCATGCTTAACCGCTCCATCCTCGGCC
GCCACATCTATGCCGTGGGTTCCAATGCGGATGCTGCCCGCCTTTCCGGCGTCAACGTCGCTCGCGTCACCAATTTCACC
TACATCCTGTCCGGCACGCTCGCCGGGCTGACGGGCTGCGTGCTGATGTCGCGTCTCGTTACCGCCCAGCCGAACGAAGG
CGTGATGTATGAGCTGGATGCCATTGCCAGTGCGGTCATCGGCGGCACATCGCTGATCGGCGGCGTGGGCACGATTTCCG
GCACGGCCATCGGCGCCTTTGTCATCGGCATTTTGCGTAACGGTCTCAATATGAACGGCGTTTCCGCCTTCACGCAACAG
ATCATCATTGGCCTTGTCATTCTGGTCACCGTCTGGATCGACCAGCTGCGCAACCGCCGCTGA

Upstream 100 bases:

>100_bases
AGGGCCGTATCACCGGCGTGCTCGAAACCGCCAAGACCAATCAAGAAGAAATCATGCGGTATGCGTCCGGTTACGGCCGG
GCCGCGCAGTGAGGAACGAC

Downstream 100 bases:

>100_bases
TCAAAAGGGCTGCGGACCCTTTCCGCAAACAAGATCGGCAGGGGAGGCCCGGTATGCCGACATCACGGAGGAAGAAATGA
AGAAAATTACGACTGCCCTT

Product: ABC transporter, membrane spanning protein (ribose)

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MANIAEPKKGFAVSDRQKDIIQKFAALGSLFALVAVFSATSNAFFTVNNGMTIALQVTSIALLGIGATCVIITGGIDLSV
GSVLALAGVVAALAVKELGMPVPIGMLLGILTGSLCGLINGLLVTRFKLPPFIATLGMMLIARGVALQITGARAVSGLGE
SFGELGNGALFRIVTIGDDGFPNVVFPGIPYPVILMVVIALAVSFMLNRSILGRHIYAVGSNADAARLSGVNVARVTNFT
YILSGTLAGLTGCVLMSRLVTAQPNEGVMYELDAIASAVIGGTSLIGGVGTISGTAIGAFVIGILRNGLNMNGVSAFTQQ
IIIGLVILVTVWIDQLRNRR

Sequences:

>Translated_340_residues
MANIAEPKKGFAVSDRQKDIIQKFAALGSLFALVAVFSATSNAFFTVNNGMTIALQVTSIALLGIGATCVIITGGIDLSV
GSVLALAGVVAALAVKELGMPVPIGMLLGILTGSLCGLINGLLVTRFKLPPFIATLGMMLIARGVALQITGARAVSGLGE
SFGELGNGALFRIVTIGDDGFPNVVFPGIPYPVILMVVIALAVSFMLNRSILGRHIYAVGSNADAARLSGVNVARVTNFT
YILSGTLAGLTGCVLMSRLVTAQPNEGVMYELDAIASAVIGGTSLIGGVGTISGTAIGAFVIGILRNGLNMNGVSAFTQQ
IIIGLVILVTVWIDQLRNRR
>Mature_339_residues
ANIAEPKKGFAVSDRQKDIIQKFAALGSLFALVAVFSATSNAFFTVNNGMTIALQVTSIALLGIGATCVIITGGIDLSVG
SVLALAGVVAALAVKELGMPVPIGMLLGILTGSLCGLINGLLVTRFKLPPFIATLGMMLIARGVALQITGARAVSGLGES
FGELGNGALFRIVTIGDDGFPNVVFPGIPYPVILMVVIALAVSFMLNRSILGRHIYAVGSNADAARLSGVNVARVTNFTY
ILSGTLAGLTGCVLMSRLVTAQPNEGVMYELDAIASAVIGGTSLIGGVGTISGTAIGAFVIGILRNGLNMNGVSAFTQQI
IIGLVILVTVWIDQLRNRR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=329, Percent_Identity=41.6413373860182, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789992, Length=366, Percent_Identity=33.6065573770492, Blast_Score=164, Evalue=8e-42,
Organism=Escherichia coli, GI1790524, Length=319, Percent_Identity=37.9310344827586, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI145693152, Length=333, Percent_Identity=33.3333333333333, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1788896, Length=335, Percent_Identity=33.7313432835821, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI145693214, Length=266, Percent_Identity=37.218045112782, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1788471, Length=294, Percent_Identity=34.0136054421769, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082395, Length=296, Percent_Identity=33.445945945946, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1787794, Length=272, Percent_Identity=30.1470588235294, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787793, Length=275, Percent_Identity=31.6363636363636, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34933; Mature: 34802

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANIAEPKKGFAVSDRQKDIIQKFAALGSLFALVAVFSATSNAFFTVNNGMTIALQVTSI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEHHH
ALLGIGATCVIITGGIDLSVGSVLALAGVVAALAVKELGMPVPIGMLLGILTGSLCGLIN
HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
GLLVTRFKLPPFIATLGMMLIARGVALQITGARAVSGLGESFGELGNGALFRIVTIGDDG
HHHHHHHCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCEEEEEEEECCCC
FPNVVFPGIPYPVILMVVIALAVSFMLNRSILGRHIYAVGSNADAARLSGVNVARVTNFT
CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHCCCCEEHHHHHH
YILSGTLAGLTGCVLMSRLVTAQPNEGVMYELDAIASAVIGGTSLIGGVGTISGTAIGAF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCHHHHCCCCCCCHHHHHHH
VIGILRNGLNMNGVSAFTQQIIIGLVILVTVWIDQLRNRR
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANIAEPKKGFAVSDRQKDIIQKFAALGSLFALVAVFSATSNAFFTVNNGMTIALQVTSI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEHHH
ALLGIGATCVIITGGIDLSVGSVLALAGVVAALAVKELGMPVPIGMLLGILTGSLCGLIN
HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
GLLVTRFKLPPFIATLGMMLIARGVALQITGARAVSGLGESFGELGNGALFRIVTIGDDG
HHHHHHHCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCEEEEEEEECCCC
FPNVVFPGIPYPVILMVVIALAVSFMLNRSILGRHIYAVGSNADAARLSGVNVARVTNFT
CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHCCCCEEHHHHHH
YILSGTLAGLTGCVLMSRLVTAQPNEGVMYELDAIASAVIGGTSLIGGVGTISGTAIGAF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCHHHHCCCCCCCHHHHHHH
VIGILRNGLNMNGVSAFTQQIIIGLVILVTVWIDQLRNRR
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]