Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is cobK [H]
Identifier: 159185388
GI number: 159185388
Start: 2800721
End: 2801503
Strand: Direct
Name: cobK [H]
Synonym: Atu2799
Alternate gene names: 159185388
Gene position: 2800721-2801503 (Clockwise)
Preceding gene: 159185386
Following gene: 159185391
Centisome position: 98.56
GC content: 61.81
Gene sequence:
>783_bases ATGACACGCTCCATACTCATCCTTGGCGGCACGGCGGATGCCCGCATTCTGGCCGGCCGGCTGGCGGAAGACTCCGGCTA CCGAATTCTGCTGTCCATGGCCGGGCGCACGCTCTCGCCGGTGGAACAGCCCGTGCCGATGCGCAGCGGCGGGTTTGGTG GCGCGGCAGGACTGGCGGATTTCATTCGCGCAGAGGGTTTCGATATTCTCGTGGACGCCACTCATCCCTATGCGGCCAGA ATTTCCGCCAATGCCGTCGAGGCGGCAAGGCTTGCCAATATACCACTGGTCGTGCTCTCGCGTCCCGTCTGGCCGCGTCA GCCGGGTGACACATGGCAGAGCGTCCACACCGTCGGACAGGCCGTCACCGCGCTGGGCACTACGGGCAAACGTGTGTTTC TGGCGCTTGGCCGTCAGGAGCTTCTTCCTTTCGAAGCAGCACCTCAGCACAGTTATCTCATCCGCAGCGTCGACCCGGTG GAACCGCCGCTGAGGGCCCCGGATGCGCGCTATATCACCGCGCGTGGTCCTTTCGTAACGGAAGATGAAATCCGCATGCT GGAGGAAAACCGCATCGAGGTGGTGATATCGAAAAACTCGGGCGGCAGCGCCAGTTACGGCAAGATCGAAGCAGCGAGAC GGCTCGGCCTGCCGGTCATCATGATCGAACGGCCGCAACAATTGAACGATACGCCCGCGAATAATGTGACCGTGCCGGAT ATCGCCACTGCGCTCACCGCCATACGCCATCAGCTTTCCCTTTTCGAAAACCGTGGCGAATAA
Upstream 100 bases:
>100_bases CAGCCCCTGAAGCCCGTCCTCGCCTATACCGACAATGGACAGCCACGGCTTTTCGTTCTTTTCAGTGGAAGCCTTTGCCG TTCCGGAATATTCAGATGTC
Downstream 100 bases:
>100_bases ACGATCGGTTCCTTGCCGGAACGCGCGATCAGGCGGGTTTCCACCGAGCCGACGATGATGCAGGTGGCCATGTCGGCCAT GTCGCTCGACGCCTCCGACA
Product: cobalt-precorrin-6x reductase
Products: NA
Alternate protein names: Precorrin-6X reductase [H]
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MTRSILILGGTADARILAGRLAEDSGYRILLSMAGRTLSPVEQPVPMRSGGFGGAAGLADFIRAEGFDILVDATHPYAAR ISANAVEAARLANIPLVVLSRPVWPRQPGDTWQSVHTVGQAVTALGTTGKRVFLALGRQELLPFEAAPQHSYLIRSVDPV EPPLRAPDARYITARGPFVTEDEIRMLEENRIEVVISKNSGGSASYGKIEAARRLGLPVIMIERPQQLNDTPANNVTVPD IATALTAIRHQLSLFENRGE
Sequences:
>Translated_260_residues MTRSILILGGTADARILAGRLAEDSGYRILLSMAGRTLSPVEQPVPMRSGGFGGAAGLADFIRAEGFDILVDATHPYAAR ISANAVEAARLANIPLVVLSRPVWPRQPGDTWQSVHTVGQAVTALGTTGKRVFLALGRQELLPFEAAPQHSYLIRSVDPV EPPLRAPDARYITARGPFVTEDEIRMLEENRIEVVISKNSGGSASYGKIEAARRLGLPVIMIERPQQLNDTPANNVTVPD IATALTAIRHQLSLFENRGE >Mature_259_residues TRSILILGGTADARILAGRLAEDSGYRILLSMAGRTLSPVEQPVPMRSGGFGGAAGLADFIRAEGFDILVDATHPYAARI SANAVEAARLANIPLVVLSRPVWPRQPGDTWQSVHTVGQAVTALGTTGKRVFLALGRQELLPFEAAPQHSYLIRSVDPVE PPLRAPDARYITARGPFVTEDEIRMLEENRIEVVISKNSGGSASYGKIEAARRLGLPVIMIERPQQLNDTPANNVTVPDI ATALTAIRHQLSLFENRGE
Specific function: Catalyzes the reduction of the macrocycle of precorrin- 6X into precorrin-6Y [H]
COG id: COG2099
COG function: function code H; Precorrin-6x reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the precorrin-6x reductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003723 [H]
Pfam domain/function: PF02571 CbiJ [H]
EC number: =1.3.1.54 [H]
Molecular weight: Translated: 28032; Mature: 27901
Theoretical pI: Translated: 7.84; Mature: 7.84
Prosite motif: PS51014 COBK_CBIJ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRSILILGGTADARILAGRLAEDSGYRILLSMAGRTLSPVEQPVPMRSGGFGGAAGLAD CCCEEEEEECCCCCCHHHHCCCCCCCCEEEEEECCCCCCCHHCCCCCCCCCCCCHHHHHH FIRAEGFDILVDATHPYAARISANAVEAARLANIPLVVLSRPVWPRQPGDTWQSVHTVGQ HHHCCCCEEEEECCCCCEEEEECCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH AVTALGTTGKRVFLALGRQELLPFEAAPQHSYLIRSVDPVEPPLRAPDARYITARGPFVT HHHHHCCCCCEEEEEECHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCC EDEIRMLEENRIEVVISKNSGGSASYGKIEAARRLGLPVIMIERPQQLNDTPANNVTVPD HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCEECHH IATALTAIRHQLSLFENRGE HHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TRSILILGGTADARILAGRLAEDSGYRILLSMAGRTLSPVEQPVPMRSGGFGGAAGLAD CCEEEEEECCCCCCHHHHCCCCCCCCEEEEEECCCCCCCHHCCCCCCCCCCCCHHHHHH FIRAEGFDILVDATHPYAARISANAVEAARLANIPLVVLSRPVWPRQPGDTWQSVHTVGQ HHHCCCCEEEEECCCCCEEEEECCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH AVTALGTTGKRVFLALGRQELLPFEAAPQHSYLIRSVDPVEPPLRAPDARYITARGPFVT HHHHHCCCCCEEEEEECHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCC EDEIRMLEENRIEVVISKNSGGSASYGKIEAARRLGLPVIMIERPQQLNDTPANNVTVPD HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCEECHH IATALTAIRHQLSLFENRGE HHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2211521; 1732193 [H]