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The map label for this gene is rimM

Identifier: 159185334

GI number: 159185334

Start: 2684495

End: 2685034

Strand: Direct

Name: rimM

Synonym: Atu2700

Alternate gene names: 159185334

Gene position: 2684495-2685034 (Clockwise)

Preceding gene: 15889953

Following gene: 15889955

Centisome position: 94.47

GC content: 59.44

Gene sequence:

>540_bases
ATGGCAAAGATCGGCGGCGCGCAGGGCCTGCGCGGCGAAGTCCGCGTCAGCACCTATACGGACGACCCGATGGCGCTGGG
CGATTACGGCAATCTGGTCACCGCCGATGGCCGCGTCTTTGAAATTCTGGAAGTTCGCGAAGGCAAGAATGTCGTCGTCG
TCCGTTTCCGTGGCATCAACGATCGCAATGCGGCCGAAAGCCTGAACGGGCTGGAACTCTTCATTGAACGCGACAATCTG
CCGGATGATGAACTCGACGATGACGAATTCTATTACGCCGATCTCGAAGGGTTGGAAGCCGTTGATGCCGAAGGAAAAAG
CTACGGCGCCGTCAGCGCCGTCTACGATTTCGGCGCGGGTGATCTGCTGGAACTGAAAGGCGCCGGCCGCCGCCCTGCCC
TCATTCCGTTTTCCGAGGCTGCGGTGCTGGAGATCGATCTGGAGGCCGGGCGCATTCTCATCGACCCAATGGCCGCCGGC
CTGATCGACAATCCTGACGACAAGGACCAAAACGGCATGTCGCCGTTCGGTAAGAAATAA

Upstream 100 bases:

>100_bases
CCGTTTTTTTGTTTATTTTGGCGTCAACAAACCTTAAAGCTGACGCAACCAACACCAGAAGACGGACGGCCCGATGGCAA
AGCTGGAAAACCCGATACTC

Downstream 100 bases:

>100_bases
ATCCATGACCTTCAAGGCGACCGTTCTGACGCTCTACCCGGAAATGTTTCCGGGGCATCTCCAATATTCGCTAGCCGGCA
AGGCGCTGGAGCGAGGGCAG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MAKIGGAQGLRGEVRVSTYTDDPMALGDYGNLVTADGRVFEILEVREGKNVVVVRFRGINDRNAAESLNGLELFIERDNL
PDDELDDDEFYYADLEGLEAVDAEGKSYGAVSAVYDFGAGDLLELKGAGRRPALIPFSEAAVLEIDLEAGRILIDPMAAG
LIDNPDDKDQNGMSPFGKK

Sequences:

>Translated_179_residues
MAKIGGAQGLRGEVRVSTYTDDPMALGDYGNLVTADGRVFEILEVREGKNVVVVRFRGINDRNAAESLNGLELFIERDNL
PDDELDDDEFYYADLEGLEAVDAEGKSYGAVSAVYDFGAGDLLELKGAGRRPALIPFSEAAVLEIDLEAGRILIDPMAAG
LIDNPDDKDQNGMSPFGKK
>Mature_178_residues
AKIGGAQGLRGEVRVSTYTDDPMALGDYGNLVTADGRVFEILEVREGKNVVVVRFRGINDRNAAESLNGLELFIERDNLP
DDELDDDEFYYADLEGLEAVDAEGKSYGAVSAVYDFGAGDLLELKGAGRRPALIPFSEAAVLEIDLEAGRILIDPMAAGL
IDNPDDKDQNGMSPFGKK

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=164, Percent_Identity=26.8292682926829, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_AGRT5 (Q8UBZ8)

Other databases:

- EMBL:   AE007869
- PIR:   AC2908
- PIR:   C97683
- RefSeq:   NP_355635.2
- ProteinModelPortal:   Q8UBZ8
- SMR:   Q8UBZ8
- STRING:   Q8UBZ8
- GeneID:   1134738
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu2700
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- PhylomeDB:   Q8UBZ8
- ProtClustDB:   PRK00122
- BioCyc:   ATUM176299-1:ATU2700-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19331; Mature: 19200

Theoretical pI: Translated: 3.98; Mature: 3.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIGGAQGLRGEVRVSTYTDDPMALGDYGNLVTADGRVFEILEVREGKNVVVVRFRGIN
CCCCCCCCCCCCEEEEEEECCCCEEECCCCCEEECCCCEEEEEEECCCCCEEEEEEECCC
DRNAAESLNGLELFIERDNLPDDELDDDEFYYADLEGLEAVDAEGKSYGAVSAVYDFGAG
CCCHHHCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCEEEEEECCCC
DLLELKGAGRRPALIPFSEAAVLEIDLEAGRILIDPMAAGLIDNPDDKDQNGMSPFGKK
CEEEECCCCCCCEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKIGGAQGLRGEVRVSTYTDDPMALGDYGNLVTADGRVFEILEVREGKNVVVVRFRGIN
CCCCCCCCCCCEEEEEEECCCCEEECCCCCEEECCCCEEEEEEECCCCCEEEEEEECCC
DRNAAESLNGLELFIERDNLPDDELDDDEFYYADLEGLEAVDAEGKSYGAVSAVYDFGAG
CCCHHHCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCEEEEEECCCC
DLLELKGAGRRPALIPFSEAAVLEIDLEAGRILIDPMAAGLIDNPDDKDQNGMSPFGKK
CEEEECCCCCCCEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194