Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is redA
Identifier: 159185283
GI number: 159185283
Start: 2569795
End: 2570946
Strand: Direct
Name: redA
Synonym: Atu2592
Alternate gene names: NA
Gene position: 2569795-2570946 (Clockwise)
Preceding gene: 159185282
Following gene: 15889856
Centisome position: 90.44
GC content: 61.98
Gene sequence:
>1152_bases ATGACCGAGATGGAAAAGCGTCCTTCCGTTTTCTTTTACGTGCAGCATCTCCTCGGCATCGGCCACATCGCCCGCGCCAG CCGCGTTGCCAATGCGCTGCAGGCGGATGGTTTCGATGTCGTTCTGGTCACCGGCGGCACCCCGGTTCCGGGTTTTCCGG GTGAGGGCATCCGCCATGTCGAACTACCACCGATCGCCGTCAGCGATAGCAGCTTTTCCGGTCTGGTCGACAGTTCCGGC AAGCCTGTGGACGAGGCCTTCAAGAACCTCAGGACCGACATGCTGATCGGCGCCTATCACGGCGCAAAGCCCGATATCGT CATCATCGAGGCTTTCCCTTTCGGCCGCAGGCAGGTGCGCTTCGAATTGCTGCCACTGCTGGACGAGATCGAGGACAGCG AACCACGCCCGCTCGTCATGACATCGCTGCGCGATATTCTGCAGGAAAAGACCAAGCCGGGCCGGGACGAAGAGACCGTA TCCCTGGTGAAGAAACATTTCGACGCGGTGCTCGTGCACGGCGATCCCGATTTCGCCCGGTTGGAAGATACTTTTCCCCT CGCCGGCGAGATCAGCCAGCGCATTGTCTATACCGGGCTCGTCGCCCCGCTGCCACCGCCGGAGCCGGCGGAAAAATTCG ATATTGTCGTTTCCGCAGGCGGCGGTGCCGTCGGTGCAGCCCTCATCCGGGCAGCCCTTGAAGCGGCCCCGCTGCTCGCT GGCATCAAAAGCTGGTGCCTTGTCACCGGTCCCAACATGCCGCAGGCGGATTTCGATGCGATCTCCGCCGAAGCGCCGGA CAATGTCTCCGTCTTCCGCTTCCGCAAGGATTTCGCCAGCCTGCTTGCCGGTGCACGGCTTTCGGTCTCACAGGCGGGTT ACAATACGGTGTGCGATATTCTCCAGGCGAAATGCCGCTCGCTCCTGATCCCATTCGCGGCCGGTGGCGAAACGGAGCAA AGCGCCCGCGCGGAACGACTGGCGCGACTAGGGCTCGCACAGGTGCTTGAGGAAAAACACATCTCCGCGCAATCCATGGC CGATGCCATCAAGGCGGCATTGGCGCTGCCGGAACCGGACAAGATCCACCTCGATCTCGATGGGGCGGCCGGCACTGCTA GAGCGTTGCACCGCCTTTATGATGAGCGCTGA
Upstream 100 bases:
>100_bases TGGGCGCTGCCGCCGAAAACCGTGTACGAACGGCGTTCGACCATCGCACTAGCATTGCCGAGTTAAAGGCTCTGTTCGAG ACCGAGTGGGAAAAGACACC
Downstream 100 bases:
>100_bases GGATCGTCTTTAGTTCGCGCACGGCGGCCTCATCCGTCGCCTTGCGCCCAGCGCCGGTGAAACCGAGCTTAGCCACCCTG CTTTCCGGATCATAAAGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 383; Mature: 382
Protein sequence:
>383_residues MTEMEKRPSVFFYVQHLLGIGHIARASRVANALQADGFDVVLVTGGTPVPGFPGEGIRHVELPPIAVSDSSFSGLVDSSG KPVDEAFKNLRTDMLIGAYHGAKPDIVIIEAFPFGRRQVRFELLPLLDEIEDSEPRPLVMTSLRDILQEKTKPGRDEETV SLVKKHFDAVLVHGDPDFARLEDTFPLAGEISQRIVYTGLVAPLPPPEPAEKFDIVVSAGGGAVGAALIRAALEAAPLLA GIKSWCLVTGPNMPQADFDAISAEAPDNVSVFRFRKDFASLLAGARLSVSQAGYNTVCDILQAKCRSLLIPFAAGGETEQ SARAERLARLGLAQVLEEKHISAQSMADAIKAALALPEPDKIHLDLDGAAGTARALHRLYDER
Sequences:
>Translated_383_residues MTEMEKRPSVFFYVQHLLGIGHIARASRVANALQADGFDVVLVTGGTPVPGFPGEGIRHVELPPIAVSDSSFSGLVDSSG KPVDEAFKNLRTDMLIGAYHGAKPDIVIIEAFPFGRRQVRFELLPLLDEIEDSEPRPLVMTSLRDILQEKTKPGRDEETV SLVKKHFDAVLVHGDPDFARLEDTFPLAGEISQRIVYTGLVAPLPPPEPAEKFDIVVSAGGGAVGAALIRAALEAAPLLA GIKSWCLVTGPNMPQADFDAISAEAPDNVSVFRFRKDFASLLAGARLSVSQAGYNTVCDILQAKCRSLLIPFAAGGETEQ SARAERLARLGLAQVLEEKHISAQSMADAIKAALALPEPDKIHLDLDGAAGTARALHRLYDER >Mature_382_residues TEMEKRPSVFFYVQHLLGIGHIARASRVANALQADGFDVVLVTGGTPVPGFPGEGIRHVELPPIAVSDSSFSGLVDSSGK PVDEAFKNLRTDMLIGAYHGAKPDIVIIEAFPFGRRQVRFELLPLLDEIEDSEPRPLVMTSLRDILQEKTKPGRDEETVS LVKKHFDAVLVHGDPDFARLEDTFPLAGEISQRIVYTGLVAPLPPPEPAEKFDIVVSAGGGAVGAALIRAALEAAPLLAG IKSWCLVTGPNMPQADFDAISAEAPDNVSVFRFRKDFASLLAGARLSVSQAGYNTVCDILQAKCRSLLIPFAAGGETEQS ARAERLARLGLAQVLEEKHISAQSMADAIKAALALPEPDKIHLDLDGAAGTARALHRLYDER
Specific function: Unknown
COG id: COG4671
COG function: function code R; Predicted glycosyl transferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41139; Mature: 41007
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEMEKRPSVFFYVQHLLGIGHIARASRVANALQADGFDVVLVTGGTPVPGFPGEGIRHV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEE ELPPIAVSDSSFSGLVDSSGKPVDEAFKNLRTDMLIGAYHGAKPDIVIIEAFPFGRRQVR CCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEECCCCCCHHHH FELLPLLDEIEDSEPRPLVMTSLRDILQEKTKPGRDEETVSLVKKHFDAVLVHGDPDFAR HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEECCCCHHH LEDTFPLAGEISQRIVYTGLVAPLPPPEPAEKFDIVVSAGGGAVGAALIRAALEAAPLLA HCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH GIKSWCLVTGPNMPQADFDAISAEAPDNVSVFRFRKDFASLLAGARLSVSQAGYNTVCDI HHHHHEEEECCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHH LQAKCRSLLIPFAAGGETEQSARAERLARLGLAQVLEEKHISAQSMADAIKAALALPEPD HHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC KIHLDLDGAAGTARALHRLYDER EEEEEECCCCHHHHHHHHHHCCC >Mature Secondary Structure TEMEKRPSVFFYVQHLLGIGHIARASRVANALQADGFDVVLVTGGTPVPGFPGEGIRHV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEE ELPPIAVSDSSFSGLVDSSGKPVDEAFKNLRTDMLIGAYHGAKPDIVIIEAFPFGRRQVR CCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEECCCCCCHHHH FELLPLLDEIEDSEPRPLVMTSLRDILQEKTKPGRDEETVSLVKKHFDAVLVHGDPDFAR HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEECCCCHHH LEDTFPLAGEISQRIVYTGLVAPLPPPEPAEKFDIVVSAGGGAVGAALIRAALEAAPLLA HCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH GIKSWCLVTGPNMPQADFDAISAEAPDNVSVFRFRKDFASLLAGARLSVSQAGYNTVCDI HHHHHEEEECCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHH LQAKCRSLLIPFAAGGETEQSARAERLARLGLAQVLEEKHISAQSMADAIKAALALPEPD HHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC KIHLDLDGAAGTARALHRLYDER EEEEEECCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA