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The map label for this gene is dap [H]

Identifier: 159185249

GI number: 159185249

Start: 2481431

End: 2482942

Strand: Reverse

Name: dap [H]

Synonym: Atu2513

Alternate gene names: 159185249

Gene position: 2482942-2481431 (Counterclockwise)

Preceding gene: 159185250

Following gene: 15889777

Centisome position: 87.38

GC content: 61.18

Gene sequence:

>1512_bases
ATGCCACAGCAATTCGACTGGAACGCCGCTTCAACGCTTTCACAGGACTTCGTCTCGCAATGGGCGGGCAATGAGCCGGG
CGGAGCGGTGATTGGTTTCGATCTCGATGGCATCCGTTTTGCCCATGCGGGTGGCGTGGAAAGCCTCGCGACCTTCGCAC
CCTTCACGCCGCAAAGCGTCGTGCGTTATGCATCCGTCACCAAACACGCCTTCTGCGCCATGGTGCTGGCCCATTCCGAT
CTGATCGGGCTTGATGATCCGCTCGGCACACATCTGCCGGAGCTGCAAGCGCCGCTTCGCGATGTCACCGTCGGGCAGGC
GCTGGATATGAGCGGCGGGTTGCCGGATACGCGCGAATGCCTGTCGTTGCTTGGTCTTTCCGTCTACACCGAAACGAAGG
CCGGCCCGCTTCTCGATTATCTCATGCGCTTGACCCGGCTGAATTTCGCAGCCGGCAGCGAGGTTTCCTATTCCAATACA
GGCTATCGTCTGGTGGAAGCGGCGTTGGAGCGCCATGGGTTCCGTTTTGATGATTTTGTGCAGGCACAGATTGCCGGTCC
GTTTGGGGTTTTCCTGAAGGCGCCTGACGTTTGGAACGATCCTGTCGATGGTCTCGTGCCGGGTTACTGGAAGTCCGAAG
AGAGCTGGCAGCTTTCCGCCGCCGGCCTGCATATTTCCGCATCCGGCAGCCTTGCCGGCAGTGCCGAGGCGCTGACCCGC
TGGCTGCAGGGCCTGATGCAGGGCGAGGGCAGCTTTGCCGGTGTTCTGGACAGGCTCTCCGCTGAGCGGCCACTTGCCGA
TGGGCGGATGAGCGAATATGGGCTTGGCCTTCGCTGGTCGCATCTCGGCGAGCGGCGTTTCGTTGGCCATGGCGGTTCGC
ATCCGGGCTACAAGACCTATTTCCTCCTCGACCCTGAAAACGGTACGGGTTTCGTGGTGGTTTCCAACCGCGAGGATACC
AACGGTTTCAAGATCGCGCTGGAAAGCATGGCGACCCTGACCGGCCTGCCTCTGCCGAAACCCGCCGCCAGTCTGCCAGA
CGGTCTTTACGTCACCAAAAGCGGTCCTTGGTGGCTGGAGATCAAGGGCAGCACATCCACTTTCATCGATGGTGACGACA
CGCTTTACGAGGATGTCGACGGCTGGGTCTCGTCGCGTTCGGCATCCTCGCCCATGCGGCTGAGGTTCGATGGCGAAGTG
ATCATTGGCGAGGCGGGCCATGCGGCCCGACGCTTCCTGCCTGTTGGCGAGCATGCCGTGCCGGATGATCTCTCGGGAAC
ATGGCGTTCGGATGAGGGCGCCGAATTTTCGATCAGCGGTTCCTCGCTGACGATGGGCATCGGCCCGACGCGCAACAGCA
TGCCGCTCACAGCGCTCGGCAATGGTCGTTTCCTTTTCACGCTGATTGACGGGCCGTGGACGAAGCGTGTCTGCCTCAAC
CGGCTGGGTGACGACAGGATCGAGCTGGTTTCCAGCCGGGCGCGGATGATCGAATATTGGAGGGGCCTTTAA

Upstream 100 bases:

>100_bases
ATCGGGCGGGTGCCGCTCGCTTCTTCTCCCCGCCGGAGGGAAGAAGCGAGCCGCGATGTCGAGGCTTTCTGCAAAGACCA
CAAAGACGCGAGACCGAGCA

Downstream 100 bases:

>100_bases
AAGGGTTTCATTCGTAGCAGGTTGATCCTAATAAAGACGCTTTCCGCATAGACGGAACAGATGTTTTTGTTGGGAGTGTG
CGCCTTGGAAGTCAAATGGC

Product: penicillin binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MPQQFDWNAASTLSQDFVSQWAGNEPGGAVIGFDLDGIRFAHAGGVESLATFAPFTPQSVVRYASVTKHAFCAMVLAHSD
LIGLDDPLGTHLPELQAPLRDVTVGQALDMSGGLPDTRECLSLLGLSVYTETKAGPLLDYLMRLTRLNFAAGSEVSYSNT
GYRLVEAALERHGFRFDDFVQAQIAGPFGVFLKAPDVWNDPVDGLVPGYWKSEESWQLSAAGLHISASGSLAGSAEALTR
WLQGLMQGEGSFAGVLDRLSAERPLADGRMSEYGLGLRWSHLGERRFVGHGGSHPGYKTYFLLDPENGTGFVVVSNREDT
NGFKIALESMATLTGLPLPKPAASLPDGLYVTKSGPWWLEIKGSTSTFIDGDDTLYEDVDGWVSSRSASSPMRLRFDGEV
IIGEAGHAARRFLPVGEHAVPDDLSGTWRSDEGAEFSISGSSLTMGIGPTRNSMPLTALGNGRFLFTLIDGPWTKRVCLN
RLGDDRIELVSSRARMIEYWRGL

Sequences:

>Translated_503_residues
MPQQFDWNAASTLSQDFVSQWAGNEPGGAVIGFDLDGIRFAHAGGVESLATFAPFTPQSVVRYASVTKHAFCAMVLAHSD
LIGLDDPLGTHLPELQAPLRDVTVGQALDMSGGLPDTRECLSLLGLSVYTETKAGPLLDYLMRLTRLNFAAGSEVSYSNT
GYRLVEAALERHGFRFDDFVQAQIAGPFGVFLKAPDVWNDPVDGLVPGYWKSEESWQLSAAGLHISASGSLAGSAEALTR
WLQGLMQGEGSFAGVLDRLSAERPLADGRMSEYGLGLRWSHLGERRFVGHGGSHPGYKTYFLLDPENGTGFVVVSNREDT
NGFKIALESMATLTGLPLPKPAASLPDGLYVTKSGPWWLEIKGSTSTFIDGDDTLYEDVDGWVSSRSASSPMRLRFDGEV
IIGEAGHAARRFLPVGEHAVPDDLSGTWRSDEGAEFSISGSSLTMGIGPTRNSMPLTALGNGRFLFTLIDGPWTKRVCLN
RLGDDRIELVSSRARMIEYWRGL
>Mature_502_residues
PQQFDWNAASTLSQDFVSQWAGNEPGGAVIGFDLDGIRFAHAGGVESLATFAPFTPQSVVRYASVTKHAFCAMVLAHSDL
IGLDDPLGTHLPELQAPLRDVTVGQALDMSGGLPDTRECLSLLGLSVYTETKAGPLLDYLMRLTRLNFAAGSEVSYSNTG
YRLVEAALERHGFRFDDFVQAQIAGPFGVFLKAPDVWNDPVDGLVPGYWKSEESWQLSAAGLHISASGSLAGSAEALTRW
LQGLMQGEGSFAGVLDRLSAERPLADGRMSEYGLGLRWSHLGERRFVGHGGSHPGYKTYFLLDPENGTGFVVVSNREDTN
GFKIALESMATLTGLPLPKPAASLPDGLYVTKSGPWWLEIKGSTSTFIDGDDTLYEDVDGWVSSRSASSPMRLRFDGEVI
IGEAGHAARRFLPVGEHAVPDDLSGTWRSDEGAEFSISGSSLTMGIGPTRNSMPLTALGNGRFLFTLIDGPWTKRVCLNR
LGDDRIELVSSRARMIEYWRGL

Specific function: Hydrolyzes N-terminal residues in D-amino acid- containing peptides [H]

COG id: COG1680

COG function: function code V; Beta-lactamase class C and other penicillin binding proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR001466
- InterPro:   IPR009090
- InterPro:   IPR012856
- InterPro:   IPR012857 [H]

Pfam domain/function: PF00144 Beta-lactamase; PF07930 DAP_B; PF07932 DAP_C [H]

EC number: =3.4.11.19 [H]

Molecular weight: Translated: 54432; Mature: 54301

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQQFDWNAASTLSQDFVSQWAGNEPGGAVIGFDLDGIRFAHAGGVESLATFAPFTPQSV
CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEECCCCHHHHHHHCCCCHHHH
VRYASVTKHAFCAMVLAHSDLIGLDDPLGTHLPELQAPLRDVTVGQALDMSGGLPDTREC
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHCCCCCEECCCCCCCCHHHH
LSLLGLSVYTETKAGPLLDYLMRLTRLNFAAGSEVSYSNTGYRLVEAALERHGFRFDDFV
HHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHCCCCCHHHH
QAQIAGPFGVFLKAPDVWNDPVDGLVPGYWKSEESWQLSAAGLHISASGSLAGSAEALTR
HEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCHHHHHH
WLQGLMQGEGSFAGVLDRLSAERPLADGRMSEYGLGLRWSHLGERRFVGHGGSHPGYKTY
HHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCEEHHHCCCEEEECCCCCCCCEEEE
FLLDPENGTGFVVVSNREDTNGFKIALESMATLTGLPLPKPAASLPDGLYVTKSGPWWLE
EEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEE
IKGSTSTFIDGDDTLYEDVDGWVSSRSASSPMRLRFDGEVIIGEAGHAARRFLPVGEHAV
EECCCCEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCHHHHHCCCCCCCCC
PDDLSGTWRSDEGAEFSISGSSLTMGIGPTRNSMPLTALGNGRFLFTLIDGPWTKRVCLN
CCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCEEEECCCEEEEEEECCCCHHHHHHH
RLGDDRIELVSSRARMIEYWRGL
HCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PQQFDWNAASTLSQDFVSQWAGNEPGGAVIGFDLDGIRFAHAGGVESLATFAPFTPQSV
CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEECCCCHHHHHHHCCCCHHHH
VRYASVTKHAFCAMVLAHSDLIGLDDPLGTHLPELQAPLRDVTVGQALDMSGGLPDTREC
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHCCCCCEECCCCCCCCHHHH
LSLLGLSVYTETKAGPLLDYLMRLTRLNFAAGSEVSYSNTGYRLVEAALERHGFRFDDFV
HHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHCCCCCHHHH
QAQIAGPFGVFLKAPDVWNDPVDGLVPGYWKSEESWQLSAAGLHISASGSLAGSAEALTR
HEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCHHHHHH
WLQGLMQGEGSFAGVLDRLSAERPLADGRMSEYGLGLRWSHLGERRFVGHGGSHPGYKTY
HHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCEEHHHCCCEEEECCCCCCCCEEEE
FLLDPENGTGFVVVSNREDTNGFKIALESMATLTGLPLPKPAASLPDGLYVTKSGPWWLE
EEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEE
IKGSTSTFIDGDDTLYEDVDGWVSSRSASSPMRLRFDGEVIIGEAGHAARRFLPVGEHAV
EECCCCEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCHHHHHCCCCCCCCC
PDDLSGTWRSDEGAEFSISGSSLTMGIGPTRNSMPLTALGNGRFLFTLIDGPWTKRVCLN
CCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCEEEECCCEEEEEEECCCCHHHHHHH
RLGDDRIELVSSRARMIEYWRGL
HCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA