Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185163
Identifier: 159185163
GI number: 159185163
Start: 2315968
End: 2317362
Strand: Direct
Name: 159185163
Synonym: Atu2338
Alternate gene names: NA
Gene position: 2315968-2317362 (Clockwise)
Preceding gene: 15889610
Following gene: 15889616
Centisome position: 81.5
GC content: 59.35
Gene sequence:
>1395_bases ATGATAAATGCGGACAACGCGCCGCGAAGCCCATATGAAAACTATAACGAATGGTACAGCCGGCAGGACAGGGCGCACCT GATCCAGAAGTCAAAAGACGCGGAAAACATCTTTCGAAAAACCGGCATTACTTTCGCAGTCTACGGCCACGCCGACAGTT CAGAAAAACTGATCCCCTTCGATATTATTCCGCGCATCATCTCCGGGCGTGAGTGGCGCAAACTGGCCCAGGGTATCGAA CAGCGCGTTCTCGCCCTCAACGCTTTCCTTGACGACATCTACCACAAGCAGGAAATCATCCGCGCCGGCCGCATTCCCCG GGAGATCATCGAGAAAAACGTCGCATTCCTGCCGGAAATGATCGGCTTCACGCCGCCTGGCGGCGTTTACACCCACATTG TCGGCACGGATATCGTCCGCACCGGCGAAGACCAATTCTACGTCCTGGAAGACAATGCCCGCACGCCATCCGGTGTCAGC TACATGCTGGAAAACCGCGAGACGATGATGCAGATGTTCCCCGAACTCTTCCATGAGAACAAGGTGCGGCGGGTCGAGGA CTACCCCTATCAGCTGCGCCAGTCGCTCGCCTCGCTGGCACCGCCCGGCTGCACCGACAAGCCGCGCGTCGCCATCCTTA CCCCCGGCATCTACAATTCCGCCTATTACGAACATTCCTTCCTCGCCGACATGATGGGCGTGGAGCTGGTGGAAGGGTCG GACCTGCGCGTCATGGACGGCAAGGTCAAGATGCGCACCACGCGCGGTTACGAGGCGATCGACGTGCTCTACCGCCGCGT CGATGACGACTTCCTTGATCCCTTGACCTTCCGGTCGGATTCGGCACTTGGCGTGCCCGGCATCATGGATGTTTATCGCG CCGGCAACATCACCATCGCCAATGCCCCCGGCACCGGCATTTCCGACGACAAGGCAATCTATTCCTACATGCCTGAGATC GTCGAATTCTATACCGGTCGCAAGCCGCTTCTCGAAAACGTGCCCACCTGGCGCTGTTCGGAGCCGGACAGCCTGAAATA TGTGCTCGACAACCTTGCCGAACTGGTCGTCAAGGAAGTCCACGGTTCGGGCGGTTACGGCATGCTGGTCGGCCCCACCG CGTCGAAGAAGGAACGGGCGCTGTTTGCCGAAAAGCTGAAAGCCCGCCCCTCCAACTACATCGCGCAGCCGACGCTGTCG CTCTCCACCGTGCCGATCATGGTCAAGAACGGCATCGCGCCGCGCCATGTCGATCTGCGTCCCTATGTGCTGGTGTCGGA CAAGGTGAAGATCATCCCCGGCGGCCTGACCCGCGTGGCCCTCAAGCAGGGTTCGCTGGTGGTCAATTCCAGCCAGGGCG GCGGCACCAAGGATACATGGGTACTGGAGGATTAA
Upstream 100 bases:
>100_bases GTAAAAAATCTTCACGGAGGCCTCCGCATAGTTCTTGCATTGCATTTCTCGTTGTATTCATATGGCAAAAAAGGGGACAT CGAAGTTGGCATTTGACGAA
Downstream 100 bases:
>100_bases GCCATGCTGGGCAGAACGGCAAACGGGCTCTACTGGATGTTCCGGTATATAGAGCGCGCTGAAAACATCGCCCGGCTGAT CGATGCAGGCCTGCGCGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 464; Mature: 464
Protein sequence:
>464_residues MINADNAPRSPYENYNEWYSRQDRAHLIQKSKDAENIFRKTGITFAVYGHADSSEKLIPFDIIPRIISGREWRKLAQGIE QRVLALNAFLDDIYHKQEIIRAGRIPREIIEKNVAFLPEMIGFTPPGGVYTHIVGTDIVRTGEDQFYVLEDNARTPSGVS YMLENRETMMQMFPELFHENKVRRVEDYPYQLRQSLASLAPPGCTDKPRVAILTPGIYNSAYYEHSFLADMMGVELVEGS DLRVMDGKVKMRTTRGYEAIDVLYRRVDDDFLDPLTFRSDSALGVPGIMDVYRAGNITIANAPGTGISDDKAIYSYMPEI VEFYTGRKPLLENVPTWRCSEPDSLKYVLDNLAELVVKEVHGSGGYGMLVGPTASKKERALFAEKLKARPSNYIAQPTLS LSTVPIMVKNGIAPRHVDLRPYVLVSDKVKIIPGGLTRVALKQGSLVVNSSQGGGTKDTWVLED
Sequences:
>Translated_464_residues MINADNAPRSPYENYNEWYSRQDRAHLIQKSKDAENIFRKTGITFAVYGHADSSEKLIPFDIIPRIISGREWRKLAQGIE QRVLALNAFLDDIYHKQEIIRAGRIPREIIEKNVAFLPEMIGFTPPGGVYTHIVGTDIVRTGEDQFYVLEDNARTPSGVS YMLENRETMMQMFPELFHENKVRRVEDYPYQLRQSLASLAPPGCTDKPRVAILTPGIYNSAYYEHSFLADMMGVELVEGS DLRVMDGKVKMRTTRGYEAIDVLYRRVDDDFLDPLTFRSDSALGVPGIMDVYRAGNITIANAPGTGISDDKAIYSYMPEI VEFYTGRKPLLENVPTWRCSEPDSLKYVLDNLAELVVKEVHGSGGYGMLVGPTASKKERALFAEKLKARPSNYIAQPTLS LSTVPIMVKNGIAPRHVDLRPYVLVSDKVKIIPGGLTRVALKQGSLVVNSSQGGGTKDTWVLED >Mature_464_residues MINADNAPRSPYENYNEWYSRQDRAHLIQKSKDAENIFRKTGITFAVYGHADSSEKLIPFDIIPRIISGREWRKLAQGIE QRVLALNAFLDDIYHKQEIIRAGRIPREIIEKNVAFLPEMIGFTPPGGVYTHIVGTDIVRTGEDQFYVLEDNARTPSGVS YMLENRETMMQMFPELFHENKVRRVEDYPYQLRQSLASLAPPGCTDKPRVAILTPGIYNSAYYEHSFLADMMGVELVEGS DLRVMDGKVKMRTTRGYEAIDVLYRRVDDDFLDPLTFRSDSALGVPGIMDVYRAGNITIANAPGTGISDDKAIYSYMPEI VEFYTGRKPLLENVPTWRCSEPDSLKYVLDNLAELVVKEVHGSGGYGMLVGPTASKKERALFAEKLKARPSNYIAQPTLS LSTVPIMVKNGIAPRHVDLRPYVLVSDKVKIIPGGLTRVALKQGSLVVNSSQGGGTKDTWVLED
Specific function: Unknown
COG id: COG2308
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.tuberculosis RV2411c [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007297 - InterPro: IPR007302 - InterPro: IPR016450 [H]
Pfam domain/function: PF04169 DUF404; PF04174 DUF407 [H]
EC number: NA
Molecular weight: Translated: 52092; Mature: 52092
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINADNAPRSPYENYNEWYSRQDRAHLIQKSKDAENIFRKTGITFAVYGHADSSEKLIPF CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCCCCCCH DIIPRIISGREWRKLAQGIEQRVLALNAFLDDIYHKQEIIRAGRIPREIIEKNVAFLPEM HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH IGFTPPGGVYTHIVGTDIVRTGEDQFYVLEDNARTPSGVSYMLENRETMMQMFPELFHEN HCCCCCCCEEEEEECCHHEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCC KVRRVEDYPYQLRQSLASLAPPGCTDKPRVAILTPGIYNSAYYEHSFLADMMGVELVEGS CHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEECCC DLRVMDGKVKMRTTRGYEAIDVLYRRVDDDFLDPLTFRSDSALGVPGIMDVYRAGNITIA CEEEECCEEEEEECCCHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEE NAPGTGISDDKAIYSYMPEIVEFYTGRKPLLENVPTWRCSEPDSLKYVLDNLAELVVKEV CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH HGSGGYGMLVGPTASKKERALFAEKLKARPSNYIAQPTLSLSTVPIMVKNGIAPRHVDLR CCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCEECCC PYVLVSDKVKIIPGGLTRVALKQGSLVVNSSQGGGTKDTWVLED CEEEECCCEEEECCCHHEEEEECCCEEEECCCCCCCCCCEEECC >Mature Secondary Structure MINADNAPRSPYENYNEWYSRQDRAHLIQKSKDAENIFRKTGITFAVYGHADSSEKLIPF CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCCCCCCH DIIPRIISGREWRKLAQGIEQRVLALNAFLDDIYHKQEIIRAGRIPREIIEKNVAFLPEM HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH IGFTPPGGVYTHIVGTDIVRTGEDQFYVLEDNARTPSGVSYMLENRETMMQMFPELFHEN HCCCCCCCEEEEEECCHHEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCC KVRRVEDYPYQLRQSLASLAPPGCTDKPRVAILTPGIYNSAYYEHSFLADMMGVELVEGS CHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEECCC DLRVMDGKVKMRTTRGYEAIDVLYRRVDDDFLDPLTFRSDSALGVPGIMDVYRAGNITIA CEEEECCEEEEEECCCHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEE NAPGTGISDDKAIYSYMPEIVEFYTGRKPLLENVPTWRCSEPDSLKYVLDNLAELVVKEV CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH HGSGGYGMLVGPTASKKERALFAEKLKARPSNYIAQPTLSLSTVPIMVKNGIAPRHVDLR CCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCEECCC PYVLVSDKVKIIPGGLTRVALKQGSLVVNSSQGGGTKDTWVLED CEEEECCCEEEECCCHHEEEEECCCEEEECCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1368738; 8590279; 8905231 [H]