Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185160
Identifier: 159185160
GI number: 159185160
Start: 2304492
End: 2305610
Strand: Reverse
Name: 159185160
Synonym: Atu2330
Alternate gene names: NA
Gene position: 2305610-2304492 (Counterclockwise)
Preceding gene: 159185161
Following gene: 15889606
Centisome position: 81.14
GC content: 63.99
Gene sequence:
>1119_bases ATGGGTCTGTGGGCGGCGGTGAAGGCGGAACGGCTCGGCATCGGTACCCTCCTGGTAGAGGCGGGTCGTCTTGGTGGCGG CGCGAGCGGCGGGCTTCTGGGCGCCTTGATGCCGCATATGCCGGACCGCTGGTCGGACAAGAAGCAGTTTCAGTTCGATG CTCTTGTCGCGCTGGAAGCGGAGATCGCGGGCTTGGAGGCAGAGACCGGGCTTTCCGGCGGTTATCGCCGCTGCGGACGG ATCATTCCACTGCCCAAGCCGCATCTGCGCGGCATCGCCGAGCGACACGAGCGGGATGCGGCGGAAAACTGGCGATCGGG TGAACGCCGGTTCCAATGGCATGTGGGAGAGAGGCCATCGGTCGCGGGCTGGGTGGATGACGCAGCGGGCGAGGCCGGTT TCGTCTTCGACACGTTGGCGGCAAGGGTCTCGCCGCGCGCCTTGATCGCGCTGCTCTCGGCTTTTCTCCGCAAGGCGCGG CATGTGCAGGTGGCGGAAGGCTGCCGGGTTGTTTCCCTTGATGCGGATGCCGGGCGGGCGGCATTGTCTTCGGGAGAGGA GATAAGCTTCGGCCATGTCGTGGTCGCCAATGGTCATGAGTCCTTTCCCCTGATCCGTGACGCTCTCGGGCTGGAAGCGG GAGTTGCGCTGGGGCAGGCGGTAAAGGGGCAAGCGGCGCTTCTCGACGCTAGCGCTGATCCGGCCATGCCGGTCGTCTTC CTCAACGGTCTTTATATCGTGCCGCATGAGGATGGCACCGTCGCGATCGGCAGTACCAGCGAAGATTGTTTTTCCGAGCC CTTCAGTACCGACGAGAAGCTCGAAAAACTGCTTGTCGACGCCTGCACCGTTGTGCCTTCCCTTGCCGGCGCGCCGGTGC TCGAACGCTGGGCCGGGCTGCGCCCGAAGGCGGTGGGGAGGGACCCGATGGTGGGGGCGATGGCCGGCACGGCGAAACTC GTTGCGCTCTCCGGTGGTTTCAAAGTGAGCTTCGGGCTCGCGCATTTTCTTGCCGATGCGGCATTAGAAACTGTTTGCGG TCACACGCCTGTCATCCCCTCGGGCTTTCGCCTTCAAGAACACGTGAGTATTGCCGTCCCGGACTTTAGAAAGTTCTGA
Upstream 100 bases:
>100_bases TTTCATGGCTAAAGCCGATAATCCCGCTTTCGAACAGGGTCAATCACCAAGAATGCGTTTGCCGGATTCCGTGCCGCTCC TCATCGTCGGCGGCGGCATC
Downstream 100 bases:
>100_bases TTGGACCACTTACGTCGTTAATCTGTCACGCAAATCACTTATCTGCTGGCCTGCAAAGAGGCCGGTTTGTCCGCATTTGC GGCGAGGTGACAGCGCATGC
Product: oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MGLWAAVKAERLGIGTLLVEAGRLGGGASGGLLGALMPHMPDRWSDKKQFQFDALVALEAEIAGLEAETGLSGGYRRCGR IIPLPKPHLRGIAERHERDAAENWRSGERRFQWHVGERPSVAGWVDDAAGEAGFVFDTLAARVSPRALIALLSAFLRKAR HVQVAEGCRVVSLDADAGRAALSSGEEISFGHVVVANGHESFPLIRDALGLEAGVALGQAVKGQAALLDASADPAMPVVF LNGLYIVPHEDGTVAIGSTSEDCFSEPFSTDEKLEKLLVDACTVVPSLAGAPVLERWAGLRPKAVGRDPMVGAMAGTAKL VALSGGFKVSFGLAHFLADAALETVCGHTPVIPSGFRLQEHVSIAVPDFRKF
Sequences:
>Translated_372_residues MGLWAAVKAERLGIGTLLVEAGRLGGGASGGLLGALMPHMPDRWSDKKQFQFDALVALEAEIAGLEAETGLSGGYRRCGR IIPLPKPHLRGIAERHERDAAENWRSGERRFQWHVGERPSVAGWVDDAAGEAGFVFDTLAARVSPRALIALLSAFLRKAR HVQVAEGCRVVSLDADAGRAALSSGEEISFGHVVVANGHESFPLIRDALGLEAGVALGQAVKGQAALLDASADPAMPVVF LNGLYIVPHEDGTVAIGSTSEDCFSEPFSTDEKLEKLLVDACTVVPSLAGAPVLERWAGLRPKAVGRDPMVGAMAGTAKL VALSGGFKVSFGLAHFLADAALETVCGHTPVIPSGFRLQEHVSIAVPDFRKF >Mature_371_residues GLWAAVKAERLGIGTLLVEAGRLGGGASGGLLGALMPHMPDRWSDKKQFQFDALVALEAEIAGLEAETGLSGGYRRCGRI IPLPKPHLRGIAERHERDAAENWRSGERRFQWHVGERPSVAGWVDDAAGEAGFVFDTLAARVSPRALIALLSAFLRKARH VQVAEGCRVVSLDADAGRAALSSGEEISFGHVVVANGHESFPLIRDALGLEAGVALGQAVKGQAALLDASADPAMPVVFL NGLYIVPHEDGTVAIGSTSEDCFSEPFSTDEKLEKLLVDACTVVPSLAGAPVLERWAGLRPKAVGRDPMVGAMAGTAKLV ALSGGFKVSFGLAHFLADAALETVCGHTPVIPSGFRLQEHVSIAVPDFRKF
Specific function: Unknown
COG id: COG0665
COG function: function code E; Glycine/D-amino acid oxidases (deaminating)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DadA oxidoreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006076 - InterPro: IPR012727 [H]
Pfam domain/function: PF01266 DAO [H]
EC number: NA
Molecular weight: Translated: 39204; Mature: 39073
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLWAAVKAERLGIGTLLVEAGRLGGGASGGLLGALMPHMPDRWSDKKQFQFDALVALEA CCCCHHHHHHHCCHHHHEEECCCCCCCCCCCHHHHHHCCCCCCCCCCHHEEHHHHEEEHH EIAGLEAETGLSGGYRRCGRIIPLPKPHLRGIAERHERDAAENWRSGERRFQWHVGERPS HHHCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC VAGWVDDAAGEAGFVFDTLAARVSPRALIALLSAFLRKARHVQVAEGCRVVSLDADAGRA CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEHHCCCEEEEECCCCCHH ALSSGEEISFGHVVVANGHESFPLIRDALGLEAGVALGQAVKGQAALLDASADPAMPVVF HHCCCCCEEECEEEEECCCCCCHHHHHHHCHHHHHHHHHHHCCCEEEEECCCCCCCCEEE LNGLYIVPHEDGTVAIGSTSEDCFSEPFSTDEKLEKLLVDACTVVPSLAGAPVLERWAGL ECCEEEEECCCCCEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC RPKAVGRDPMVGAMAGTAKLVALSGGFKVSFGLAHFLADAALETVCGHTPVIPSGFRLQE CCCCCCCCCCCCHHCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEECC HVSIAVPDFRKF CEEEECCHHHCC >Mature Secondary Structure GLWAAVKAERLGIGTLLVEAGRLGGGASGGLLGALMPHMPDRWSDKKQFQFDALVALEA CCCHHHHHHHCCHHHHEEECCCCCCCCCCCHHHHHHCCCCCCCCCCHHEEHHHHEEEHH EIAGLEAETGLSGGYRRCGRIIPLPKPHLRGIAERHERDAAENWRSGERRFQWHVGERPS HHHCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC VAGWVDDAAGEAGFVFDTLAARVSPRALIALLSAFLRKARHVQVAEGCRVVSLDADAGRA CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEHHCCCEEEEECCCCCHH ALSSGEEISFGHVVVANGHESFPLIRDALGLEAGVALGQAVKGQAALLDASADPAMPVVF HHCCCCCEEECEEEEECCCCCCHHHHHHHCHHHHHHHHHHHCCCEEEEECCCCCCCCEEE LNGLYIVPHEDGTVAIGSTSEDCFSEPFSTDEKLEKLLVDACTVVPSLAGAPVLERWAGL ECCEEEEECCCCCEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC RPKAVGRDPMVGAMAGTAKLVALSGGFKVSFGLAHFLADAALETVCGHTPVIPSGFRLQE CCCCCCCCCCCCHHCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEECC HVSIAVPDFRKF CEEEECCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8682785; 10984043; 8097014 [H]