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The map label for this gene is ydcO [H]

Identifier: 159185130

GI number: 159185130

Start: 2238735

End: 2239913

Strand: Reverse

Name: ydcO [H]

Synonym: Atu2265

Alternate gene names: 159185130

Gene position: 2239913-2238735 (Counterclockwise)

Preceding gene: 15889542

Following gene: 159185129

Centisome position: 78.83

GC content: 64.04

Gene sequence:

>1179_bases
ATGCTGAAAGATTTTTCCGTCCAGAGTCTGTTCATGGGGTGCCTGACCGCCTTTGTCGGCTTCGCCAGCTCTTTCGCCGT
CATATTGCAGGGTCTGAAGGCTGTCGGTGCGACGGATTTTCAGGCGGCATCGGGGCTGATGGTGCTTTCGGTGGCGATGG
GCCTGTGTGCGATCATTCTGTCCGTTGCGACAAGGATGCCCATCAGCATGGCCTGGTCGACGCCCGGTGGCGCCCTCTTG
GCAACCACGGGGGTGATCGAGGGTGGTTTTCCGGCGGCCGTCGGCGGCTTTGTCGTCTGCGCCATCCTGATCATCATTGC
CGGCCTGTTCAGGCCGCTCGGAAGGGCCGTTGCCTCCATTCCCGCGCCGCTTGCCAATGCCATGCTCTCCGGGGTTATCA
TCGGCCTGTGTTACGCGCCGATCAAGGCAATCGGTTTCAACCCGGCGCTTGGCCTGCCCATCATCCTCGCCTGGATCGTG
GTGGGCGCTTTCAGGCGGCTTTTCGCTGTGCCCGCGGCGCTTGCAGCCTTTGTGCTGGTGATGATCTTCGGTGTCGATAT
TCCCGCGGGCGCTCTCGACAGCGTGGCGCAATCGCTGACGCCGCCGATGGAATGGGTGACGCCCACCTTCAGCCTGCACG
CCGTCGTCTCCATTGCGCTGCCGCTCTTCATCGTCACCATGGCCTCGCAGAATATCCCCGGCATCGCAGTGCTGAAGGTC
AACCACTACGATCCGCAGCCCGGACCGCTTTTCGCCGCGAGCGGGTTTTTCTCGTTGCTTTCAGCGCCGTTCGGTGGCCA
TGCGGTCAATCTCGCGGCAATCACGGCCGCGATGTGCGCCGGCGAGGATGCCCATCCCGATCCAAAACGACGCTACTGGG
CGGCTATCATCGCCGGTGTCGGCTATATCATCTCCGGTCTGCTCGCGGGCGCCGTCACGGCCTTCGTGGCGCTGGCGCCG
CCCATCCTCATTCAGGCGGTGGCGGGTCTGGCGCTGGTCGGCGCCTTTTCCGGCTCCGCCGTGGCAGCCTTCAAGGAGCC
GGATACCCGCGAGGCGGCGGCAATCACCTTCCTCATCACGGCATCCGGCCTCTCTTTCGCCGGCGTTTCCGGGGCCTTCT
GGGGGCTGATCGGCGGTGGGCTGATGATGGCGTTGCAGCGGGTTGTGAAGCGTGGTTAG

Upstream 100 bases:

>100_bases
CATCTTGGGATTCGCGTGTCACGCTTCAAGTTTCGTTCCTGCCCGTCGCCCTGCAGACAGCTGCGGTTCTTAGGACGGGC
AGCAGGCCGCAGAGTGCATC

Downstream 100 bases:

>100_bases
GCTGAATGGAACACTGAAATGGTGGGGACTGGCAGAGCGGGAAAATAAGCCTGCACCTCACAAGATCACTTGTCAGACCG
CCGGCCGCTGTTTATACACG

Product: benzoate transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MLKDFSVQSLFMGCLTAFVGFASSFAVILQGLKAVGATDFQAASGLMVLSVAMGLCAIILSVATRMPISMAWSTPGGALL
ATTGVIEGGFPAAVGGFVVCAILIIIAGLFRPLGRAVASIPAPLANAMLSGVIIGLCYAPIKAIGFNPALGLPIILAWIV
VGAFRRLFAVPAALAAFVLVMIFGVDIPAGALDSVAQSLTPPMEWVTPTFSLHAVVSIALPLFIVTMASQNIPGIAVLKV
NHYDPQPGPLFAASGFFSLLSAPFGGHAVNLAAITAAMCAGEDAHPDPKRRYWAAIIAGVGYIISGLLAGAVTAFVALAP
PILIQAVAGLALVGAFSGSAVAAFKEPDTREAAAITFLITASGLSFAGVSGAFWGLIGGGLMMALQRVVKRG

Sequences:

>Translated_392_residues
MLKDFSVQSLFMGCLTAFVGFASSFAVILQGLKAVGATDFQAASGLMVLSVAMGLCAIILSVATRMPISMAWSTPGGALL
ATTGVIEGGFPAAVGGFVVCAILIIIAGLFRPLGRAVASIPAPLANAMLSGVIIGLCYAPIKAIGFNPALGLPIILAWIV
VGAFRRLFAVPAALAAFVLVMIFGVDIPAGALDSVAQSLTPPMEWVTPTFSLHAVVSIALPLFIVTMASQNIPGIAVLKV
NHYDPQPGPLFAASGFFSLLSAPFGGHAVNLAAITAAMCAGEDAHPDPKRRYWAAIIAGVGYIISGLLAGAVTAFVALAP
PILIQAVAGLALVGAFSGSAVAAFKEPDTREAAAITFLITASGLSFAGVSGAFWGLIGGGLMMALQRVVKRG
>Mature_392_residues
MLKDFSVQSLFMGCLTAFVGFASSFAVILQGLKAVGATDFQAASGLMVLSVAMGLCAIILSVATRMPISMAWSTPGGALL
ATTGVIEGGFPAAVGGFVVCAILIIIAGLFRPLGRAVASIPAPLANAMLSGVIIGLCYAPIKAIGFNPALGLPIILAWIV
VGAFRRLFAVPAALAAFVLVMIFGVDIPAGALDSVAQSLTPPMEWVTPTFSLHAVVSIALPLFIVTMASQNIPGIAVLKV
NHYDPQPGPLFAASGFFSLLSAPFGGHAVNLAAITAAMCAGEDAHPDPKRRYWAAIIAGVGYIISGLLAGAVTAFVALAP
PILIQAVAGLALVGAFSGSAVAAFKEPDTREAAAITFLITASGLSFAGVSGAFWGLIGGGLMMALQRVVKRG

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=382, Percent_Identity=38.2198952879581, Blast_Score=225, Evalue=4e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 39723; Mature: 39723

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKDFSVQSLFMGCLTAFVGFASSFAVILQGLKAVGATDFQAASGLMVLSVAMGLCAIIL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
SVATRMPISMAWSTPGGALLATTGVIEGGFPAAVGGFVVCAILIIIAGLFRPLGRAVASI
HHHHCCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAPLANAMLSGVIIGLCYAPIKAIGFNPALGLPIILAWIVVGAFRRLFAVPAALAAFVLV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIFGVDIPAGALDSVAQSLTPPMEWVTPTFSLHAVVSIALPLFIVTMASQNIPGIAVLKV
HHHHCCCCCHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
NHYDPQPGPLFAASGFFSLLSAPFGGHAVNLAAITAAMCAGEDAHPDPKRRYWAAIIAGV
ECCCCCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
GYIISGLLAGAVTAFVALAPPILIQAVAGLALVGAFSGSAVAAFKEPDTREAAAITFLIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHEEEEEE
ASGLSFAGVSGAFWGLIGGGLMMALQRVVKRG
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLKDFSVQSLFMGCLTAFVGFASSFAVILQGLKAVGATDFQAASGLMVLSVAMGLCAIIL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
SVATRMPISMAWSTPGGALLATTGVIEGGFPAAVGGFVVCAILIIIAGLFRPLGRAVASI
HHHHCCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAPLANAMLSGVIIGLCYAPIKAIGFNPALGLPIILAWIVVGAFRRLFAVPAALAAFVLV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIFGVDIPAGALDSVAQSLTPPMEWVTPTFSLHAVVSIALPLFIVTMASQNIPGIAVLKV
HHHHCCCCCHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
NHYDPQPGPLFAASGFFSLLSAPFGGHAVNLAAITAAMCAGEDAHPDPKRRYWAAIIAGV
ECCCCCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
GYIISGLLAGAVTAFVALAPPILIQAVAGLALVGAFSGSAVAAFKEPDTREAAAITFLIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHEEEEEE
ASGLSFAGVSGAFWGLIGGGLMMALQRVVKRG
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]