Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185104
Identifier: 159185104
GI number: 159185104
Start: 2188353
End: 2189843
Strand: Reverse
Name: 159185104
Synonym: Atu2220
Alternate gene names: NA
Gene position: 2189843-2188353 (Counterclockwise)
Preceding gene: 159185105
Following gene: 15889495
Centisome position: 77.06
GC content: 62.84
Gene sequence:
>1491_bases ATGCATGACGGCGTGGCCTTGCCTCATGCGCAGGCAAGCGAACAGCATCGGTGGCTGACGTTTGCGATCGCGGCGATCAT TGTCGTGACAGTGCTGCGGGTTGTTGGGCTGGCCTTCAATCGTACCGATCTCTTCGTCGATGAGGCGCAATATTGGCTAT GGGGCCGGGAGATGGCGCTCGGCGCCTATTCCAAGCCGCCGCTGATCGGCTGGCTCATTCGCGCGGCAACTATTCTTGGC GGCGGCGAGGGCACCTTCCAGGTGCGGCTGGCCGCACCGGTGGTGCATGGCGTTGCGGCGGCGGCCATTCTTGTGCTGGG CCGGATGGTCTATGATATCAGGTTGGCCTCGCTGGCCGCCCTTGTCTATCTGACGCTGCCCGCCGTGACACTCGGCAGCC TGCTGATCTCAACCGATACGCCGATGATGCTGTTCATCGTGCTGTCGATGATCTCGGTCAGGAAGCTTGCGCAGGCGCGG GCCGAAAGCAGGGGTGCGCTGGGCTGGAGCATCGCTCTCGGCCTCTGTTTCGGCCTCGGCCTGATGTCGAAATATGCGAT GATCTATTTTCTGCCCTGCTTCATCGCAGCCGGCTGGCTTTGCGAAGCATGGCGCATCCGGCTGCGCGACGCGGCGATTG CCGTGCTGATCTGCGGTGCCGTCATCGCCCCCAATCTGTGGTGGAACGCCGCGCATGATTTCATGACCGCGCGCCATACG GCTGATAACGCGAACTGGCATGGCGTCCAGCTGAAGGTCGGTTCCGCGCTGGAATTTTTCTTCTCGCAGGCCGGCGTGGT CGGTCCCTTCGTTTTTGTCGGCATGATTGTCGCAACAATCCGCGCAAAGACAGCCGAAGACCGTGCGCTGGTCGCGCTTT CGGTGCCGATCGTGCTTTTGATTACGGCGCAGGGCCTGATGTCGCGCTCACTCGCCAACTGGGCGGTGGGGGCTTATGCG GCTGGCGTGCTTCTGGCGGTGCCGGTGCTGGCGTCACGGCGCTGGCTCACCGTGTCCACTTTGGTGCTCGGCGGTGTCGT CGCCGTCGCATTGCCGCTGATGACGATTGCCGGAACGGAGTTACGCCTTCCGAAGGGCGAACTGGCGATGGCGCGTTATC TCGGGCGCTCCGAGTTGGTGTCGACCGGCCTGTCGCGGGCGCGTGAGGCGGGGGCGGATGCCATCGTCGCCAATGATCGT TCGATATTGGCCGAGCTTTTTTACCAGTTGCGGGATGAAAAACAGGTGTTGACGCGCGCCTTGCCCGAAACCGGTGTGCC ATCAAGCCATTATGCGCTTCTTTATCCGCTGAAATCAGGCGAAGCGAAAAATCCGCTGTTTCTGGCAGGCGTGGATGGTT TGCCGGCATGCCTTGCCGGCGAGGCGCCGGTTGCGCATTGGACCGCCGGGCCGGGCTTTTTGGAGGGCCGGGAAATCGGG CTCTGGCGCCTGCCGCCGCAATGCATTCCGGGGGGCGCTCATGGACAATGA
Upstream 100 bases:
>100_bases GCACTGTGGCGGCGCGACCCGGTCTTTGTTATCGGGCAGGCGTCAGGCCTTCTCATCTATGCTCGAAATCTCTGGTTGAT CCATGCAGAACGCCGCCAGC
Downstream 100 bases:
>100_bases TCTCTCCCATATGCGGATCACCATCTGGGTAACGCTTGTGGCACTCGCGCTCGTCATCCTGTTTGCAACCTTCCCCTCCA TCGATCTGCGGTTTTCCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Glycosyl Transferase Family Protein; Dolichyl-Phosphate-Mannose-Protein Mannosyltransferase; Glycosyltransferase; Glycosyltransferase Family; Undecaprenyl-PhosphomannoseProtein Mannosyltransferase; Dolichol Monophosphate Mannose Synthase; Glycosyl Transferase; Family; 4-Amino-4-Deoxy-L-Arabinose Transferase; Dolichyl-Phosphate Beta-D-Mannosyltransferase; Glycosyltransferase Protein; Transmembrane Protein
Number of amino acids: Translated: 496; Mature: 496
Protein sequence:
>496_residues MHDGVALPHAQASEQHRWLTFAIAAIIVVTVLRVVGLAFNRTDLFVDEAQYWLWGREMALGAYSKPPLIGWLIRAATILG GGEGTFQVRLAAPVVHGVAAAAILVLGRMVYDIRLASLAALVYLTLPAVTLGSLLISTDTPMMLFIVLSMISVRKLAQAR AESRGALGWSIALGLCFGLGLMSKYAMIYFLPCFIAAGWLCEAWRIRLRDAAIAVLICGAVIAPNLWWNAAHDFMTARHT ADNANWHGVQLKVGSALEFFFSQAGVVGPFVFVGMIVATIRAKTAEDRALVALSVPIVLLITAQGLMSRSLANWAVGAYA AGVLLAVPVLASRRWLTVSTLVLGGVVAVALPLMTIAGTELRLPKGELAMARYLGRSELVSTGLSRAREAGADAIVANDR SILAELFYQLRDEKQVLTRALPETGVPSSHYALLYPLKSGEAKNPLFLAGVDGLPACLAGEAPVAHWTAGPGFLEGREIG LWRLPPQCIPGGAHGQ
Sequences:
>Translated_496_residues MHDGVALPHAQASEQHRWLTFAIAAIIVVTVLRVVGLAFNRTDLFVDEAQYWLWGREMALGAYSKPPLIGWLIRAATILG GGEGTFQVRLAAPVVHGVAAAAILVLGRMVYDIRLASLAALVYLTLPAVTLGSLLISTDTPMMLFIVLSMISVRKLAQAR AESRGALGWSIALGLCFGLGLMSKYAMIYFLPCFIAAGWLCEAWRIRLRDAAIAVLICGAVIAPNLWWNAAHDFMTARHT ADNANWHGVQLKVGSALEFFFSQAGVVGPFVFVGMIVATIRAKTAEDRALVALSVPIVLLITAQGLMSRSLANWAVGAYA AGVLLAVPVLASRRWLTVSTLVLGGVVAVALPLMTIAGTELRLPKGELAMARYLGRSELVSTGLSRAREAGADAIVANDR SILAELFYQLRDEKQVLTRALPETGVPSSHYALLYPLKSGEAKNPLFLAGVDGLPACLAGEAPVAHWTAGPGFLEGREIG LWRLPPQCIPGGAHGQ >Mature_496_residues MHDGVALPHAQASEQHRWLTFAIAAIIVVTVLRVVGLAFNRTDLFVDEAQYWLWGREMALGAYSKPPLIGWLIRAATILG GGEGTFQVRLAAPVVHGVAAAAILVLGRMVYDIRLASLAALVYLTLPAVTLGSLLISTDTPMMLFIVLSMISVRKLAQAR AESRGALGWSIALGLCFGLGLMSKYAMIYFLPCFIAAGWLCEAWRIRLRDAAIAVLICGAVIAPNLWWNAAHDFMTARHT ADNANWHGVQLKVGSALEFFFSQAGVVGPFVFVGMIVATIRAKTAEDRALVALSVPIVLLITAQGLMSRSLANWAVGAYA AGVLLAVPVLASRRWLTVSTLVLGGVVAVALPLMTIAGTELRLPKGELAMARYLGRSELVSTGLSRAREAGADAIVANDR SILAELFYQLRDEKQVLTRALPETGVPSSHYALLYPLKSGEAKNPLFLAGVDGLPACLAGEAPVAHWTAGPGFLEGREIG LWRLPPQCIPGGAHGQ
Specific function: Unknown
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52954; Mature: 52954
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHDGVALPHAQASEQHRWLTFAIAAIIVVTVLRVVGLAFNRTDLFVDEAQYWLWGREMAL CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHC GAYSKPPLIGWLIRAATILGGGEGTFQVRLAAPVVHGVAAAAILVLGRMVYDIRLASLAA CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVYLTLPAVTLGSLLISTDTPMMLFIVLSMISVRKLAQARAESRGALGWSIALGLCFGLG HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LMSKYAMIYFLPCFIAAGWLCEAWRIRLRDAAIAVLICGAVIAPNLWWNAAHDFMTARHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC ADNANWHGVQLKVGSALEFFFSQAGVVGPFVFVGMIVATIRAKTAEDRALVALSVPIVLL CCCCCEEEEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH ITAQGLMSRSLANWAVGAYAAGVLLAVPVLASRRWLTVSTLVLGGVVAVALPLMTIAGTE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC LRLPKGELAMARYLGRSELVSTGLSRAREAGADAIVANDRSILAELFYQLRDEKQVLTRA EECCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCHHHHHHHH LPETGVPSSHYALLYPLKSGEAKNPLFLAGVDGLPACLAGEAPVAHWTAGPGFLEGREIG CCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCHHHCCCCCCCEECCCCCCCCCCCCC LWRLPPQCIPGGAHGQ EEECCHHHCCCCCCCC >Mature Secondary Structure MHDGVALPHAQASEQHRWLTFAIAAIIVVTVLRVVGLAFNRTDLFVDEAQYWLWGREMAL CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHC GAYSKPPLIGWLIRAATILGGGEGTFQVRLAAPVVHGVAAAAILVLGRMVYDIRLASLAA CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVYLTLPAVTLGSLLISTDTPMMLFIVLSMISVRKLAQARAESRGALGWSIALGLCFGLG HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LMSKYAMIYFLPCFIAAGWLCEAWRIRLRDAAIAVLICGAVIAPNLWWNAAHDFMTARHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC ADNANWHGVQLKVGSALEFFFSQAGVVGPFVFVGMIVATIRAKTAEDRALVALSVPIVLL CCCCCEEEEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH ITAQGLMSRSLANWAVGAYAAGVLLAVPVLASRRWLTVSTLVLGGVVAVALPLMTIAGTE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC LRLPKGELAMARYLGRSELVSTGLSRAREAGADAIVANDRSILAELFYQLRDEKQVLTRA EECCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCHHHHHHHH LPETGVPSSHYALLYPLKSGEAKNPLFLAGVDGLPACLAGEAPVAHWTAGPGFLEGREIG CCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCHHHCCCCCCCEECCCCCCCCCCCCC LWRLPPQCIPGGAHGQ EEECCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA