Definition Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence.
Accession NC_003062
Length 2,841,580

Click here to switch to the map view.

The map label for this gene is 159185105

Identifier: 159185105

GI number: 159185105

Start: 2189836

End: 2190123

Strand: Reverse

Name: 159185105

Synonym: Atu2221

Alternate gene names: NA

Gene position: 2190123-2189836 (Counterclockwise)

Preceding gene: 159185106

Following gene: 159185104

Centisome position: 77.07

GC content: 54.17

Gene sequence:

>288_bases
ATGCTGCATGTGAACAGCTGGAAAGAATTCGTATGGGTCTTGACCGGCTTCATGGGCCAGATGCTGTTCACCATGCGTTT
TCTGGTTCAATGGATTTCCTCTGAAAGGGCGAGCCGCTCGGTCATGCCGGTCGCCTTCTGGTATTTTTCCATTCTCGGCG
GTGTGGTGCTGCTTTCTTATGCACTGTGGCGGCGCGACCCGGTCTTTGTTATCGGGCAGGCGTCAGGCCTTCTCATCTAT
GCTCGAAATCTCTGGTTGATCCATGCAGAACGCCGCCAGCATGCATGA

Upstream 100 bases:

>100_bases
TGATCGGCGTCGTCTGGCTATTGCGCCGGCGCAAGCGGTCAAGCTGGGCTGAAACCTTCAAAACGGAGACATCGCCGTGA
ATGCACCGGCTTTATGGTCC

Downstream 100 bases:

>100_bases
CGGCGTGGCCTTGCCTCATGCGCAGGCAAGCGAACAGCATCGGTGGCTGACGTTTGCGATCGCGGCGATCATTGTCGTGA
CAGTGCTGCGGGTTGTTGGG

Product: Lipid A biosynthesis protein

Products: NA

Alternate protein names: Lipid A Biosynthesis Domain Protein; Lipid A Biosynthesis; Lipid A Biosynthesis-Like; Lipid-A-Disaccharide Synthase Domain-Containing Protein; Transport-Related Membrane Protein; Lipid A Biosynthesis N-Terminal; Lipid-A-Disaccharide Synthase; Lipid A Biosynthesis Protein; Lipid A Biosynthesis N-Terminal Domain Family; LAB_N Domain-Containing Protein; Lipid A Disaccharide Synthase; Lipid A Biosynthesis N-Terminal Domain Protein

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MLHVNSWKEFVWVLTGFMGQMLFTMRFLVQWISSERASRSVMPVAFWYFSILGGVVLLSYALWRRDPVFVIGQASGLLIY
ARNLWLIHAERRQHA

Sequences:

>Translated_95_residues
MLHVNSWKEFVWVLTGFMGQMLFTMRFLVQWISSERASRSVMPVAFWYFSILGGVVLLSYALWRRDPVFVIGQASGLLIY
ARNLWLIHAERRQHA
>Mature_95_residues
MLHVNSWKEFVWVLTGFMGQMLFTMRFLVQWISSERASRSVMPVAFWYFSILGGVVLLSYALWRRDPVFVIGQASGLLIY
ARNLWLIHAERRQHA

Specific function: Unknown

COG id: COG3952

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11191; Mature: 11191

Theoretical pI: Translated: 11.27; Mature: 11.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHVNSWKEFVWVLTGFMGQMLFTMRFLVQWISSERASRSVMPVAFWYFSILGGVVLLSY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ALWRRDPVFVIGQASGLLIYARNLWLIHAERRQHA
HHHCCCCEEEEECCCCEEEEEECEEEEECCCCCCC
>Mature Secondary Structure
MLHVNSWKEFVWVLTGFMGQMLFTMRFLVQWISSERASRSVMPVAFWYFSILGGVVLLSY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ALWRRDPVFVIGQASGLLIYARNLWLIHAERRQHA
HHHCCCCEEEEECCCCEEEEEECEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA